1 HisKA_3#1
176-239 aa · 64 aa · 17.1% of protein
Raw token
HisKA_3:176:3.02e-23:239:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EC910_RS02815
Histidine kinase, Classic
Bacillus thuringiensis · GCF_004343085
ClassHKTypeClassicLength374 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004343085#EC910_RS02815Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length374 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage146 / 374 aa (39.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa374 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
284-365 aa · 82 aa · 21.9% of protein
Raw token
HATPase_c:284:0.00000000000552:365:100:109- Raw architecture: HisKA_3:176:3.02e-23:239:64:68#HATPase_c:284:0.00000000000552:365:100:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004343085::NZ_SMDG01000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span500116-501839Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEC910_101586RefSeq proteinWP_131931137.1
Context group ID
GCF_004343085::NZ_SMDG01000001.1::G00005Context members
EC910_RS02810EC910_RS02815
Partner locus tags
EC910_RS02810EC910_RS02815
Partner old locus tags
EC910_101585EC910_101586
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_131931137.1Primary protein accession used for annex mappings.
UniProt accessionA0A4R4BLT6Primary UniProt accession resolved in the annex database.
UniProt IDA0A4R4BLT6_BACTUDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEC910_RS02815Primary locus identifier stored in the genes table.
Old locus tagEC910_101586Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SMDG01000001.1Sequence record reported by the local genomic context database.
Genomic interval500 715-501 839 nt1 125 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span500 116-501 839 ntGCF_004343085::NZ_SMDG01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004343085::NZ_SMDG01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SMDG01000001.1All displayed genes belong to this local TCS context.
Neighborhood span500 116-501 839 nt1 724 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
500 116 nt501 839 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EC910_RS02810GCF_004343085#EC910_RS02810
RRNarL
500 116-500 718 nt · Reverse (-)
EC910_RS02815GCF_004343085#EC910_RS02815
HKClassicCurrent focus
500 715-501 839 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004343085#EC910_RS02815The current gene is the representative for this cluster.
PFAM architectureDesK_N + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2658984
Simplified PFAM architecture for HKOC_2658984
PFAM domain coverage: 284 / 374 aa (75.9%)
1 aa374 aa
DesK_NHisKA_3HATPase_c
- Simplified architecture: DesK_N + HisKA_3 + HATPase_c
- Raw architecture: DesK_N[4-144] | HisKA_3[176-239] | HATPase_c[282-360]
- Domain count: 3
- Matched identifier: HKOC_2658984
- Positioned domains: DesK_N 4-144 ; HisKA_3 176-239 ; HATPase_c 282-360
Cluster members and taxonomy
Representative gene: GCF_004343085#EC910_RS02815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_004343085
AssemblyASM434308v1 · Scaffoldhaploid
Genome composition6 102 587 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 108 · HK 59 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key