1 Response_reg#1
27-138 aa · 112 aa · 46.5% of protein
Raw token
Response_reg:27:5.17e-28:138:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10129_RS04275
Response regulator NarL family
Bifidobacterium longum subsp. longum · GCF_004334775
ClassRRTypeNarLLength241 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004334775#MCC10129_RS04275Stable P2CS identifier used across views.
GenomeGCF_004334775Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 241 aa (70.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
176-232 aa · 57 aa · 23.7% of protein
Raw token
HTH_LUXR:176:0.00000000000000141:232:58:58- Raw architecture: Response_reg:27:5.17e-28:138:112:111#HTH_LUXR:176:0.00000000000000141:232:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004334775::NZ_SHTP01000004.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span143215-145207Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC10129_0794RefSeq proteinWP_131312937.1
Context group ID
GCF_004334775::NZ_SHTP01000004.1::G00002Context members
MCC10129_RS04275MCC10129_RS04280
Partner locus tags
MCC10129_RS04275MCC10129_RS04280
Partner old locus tags
MCC10129_0794MCC10129_0795
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131312937.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10129_RS04275Primary locus identifier stored in the genes table.
Old locus tagMCC10129_0794Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SHTP01000004.1Sequence record reported by the local genomic context database.
Genomic interval143 215-143 940 nt726 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span143 215-145 207 ntGCF_004334775::NZ_SHTP01000004.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004334775::NZ_SHTP01000004.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHTP01000004.1All displayed genes belong to this local TCS context.
Neighborhood span143 215-145 207 nt1 993 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
143 215 nt145 207 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MCC10129_RS04275GCF_004334775#MCC10129_RS04275
RRNarLCurrent focus
143 215-143 940 nt · Reverse (-)
MCC10129_RS04280GCF_004334775#MCC10129_RS04280
HKClassic
143 975-145 207 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004334775#MCC10129_RS04275The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0868502
Simplified PFAM architecture for RROC_0868502
PFAM domain coverage: 165 / 241 aa (68.5%)
1 aa241 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[25-138] | GerE[178-228]
- Domain count: 2
- Matched identifier: RROC_0868502
- Positioned domains: Response_reg 25-138 ; Response_reg 25-138 ; GerE 178-228 ; GerE 178-228
Cluster members and taxonomy
Representative gene: GCF_004334775#MCC10129_RS04275
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004334775
AssemblyASM433477v1 · Contighaploid
Genome composition2 273 526 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key