1 Response_reg#1
1-99 aa · 99 aa · 81.1% of protein
Raw token
Response_reg:1:0.00000257:99:99:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10058_RS04890
Response regulator, CheY family
Bifidobacterium longum subsp. longum · GCF_004334215
ClassRRTypeCheYLength122 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004334215#MCC10058_RS04890Stable P2CS identifier used across views.
GenomeGCF_004334215Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length122 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage99 / 122 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa122 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:1:0.00000257:99:99:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004334215::NZ_SHRI01000021.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1523-1891Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004334215::NZ_SHRI01000021.1::G00007Context members
MCC10058_RS04890
Partner locus tags
MCC10058_RS04890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131270341.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10058_RS04890Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_SHRI01000021.1Sequence record reported by the local genomic context database.
Genomic interval1 523-1 891 nt369 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 523-1 891 ntGCF_004334215::NZ_SHRI01000021.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004334215::NZ_SHRI01000021.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHRI01000021.1All displayed genes belong to this local TCS context.
Neighborhood span1 523-1 891 nt369 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 523 nt1 891 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MCC10058_RS04890GCF_004334215#MCC10058_RS04890
RRCheYCurrent focus
1 523-1 891 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004334215#MCC10058_RS04890The current gene is the representative for this cluster.
PFAM architectureNo PFAM architecture availablePFAM architecture is attached when the local PFAM databases provide a match.
PFAM architecture for RROC_2406993
No PFAM cluster architecture is available for the current selection on this server.
Cluster members and taxonomy
Representative gene: GCF_004334215#MCC10058_RS04890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004334215
AssemblyASM433421v1 · Contighaploid
Genome composition2 329 562 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 23 · HK 10 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key