1 Response_reg#1
38-149 aa · 112 aa · 44.4% of protein
Raw token
Response_reg:38:2.91e-28:149:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10043_RS07250
Response regulator NarL family
Bifidobacterium longum subsp. longum · GCF_004333635
ClassRRTypeNarLLength252 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004333635#MCC10043_RS07250Stable P2CS identifier used across views.
GenomeGCF_004333635Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length252 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 252 aa (67.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa252 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
187-243 aa · 57 aa · 22.6% of protein
Raw token
HTH_LUXR:187:6.78e-16:243:58:58- Raw architecture: Response_reg:38:2.91e-28:149:112:111#HTH_LUXR:187:6.78e-16:243:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004333635::NZ_SHQU01000030.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span70000-70758Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC10043_1371RefSeq proteinWP_131211908.1
Context group ID
GCF_004333635::NZ_SHQU01000030.1::G00009Context members
MCC10043_RS07250
Partner locus tags
MCC10043_RS07250
Partner old locus tags
MCC10043_1371
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_131211908.1Primary protein accession used for annex mappings.
UniProt accessionA0AB38IDX5Primary UniProt accession resolved in the annex database.
UniProt IDA0AB38IDX5_BIFLLDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10043_RS07250Primary locus identifier stored in the genes table.
Old locus tagMCC10043_1371Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SHQU01000030.1Sequence record reported by the local genomic context database.
Genomic interval70 000-70 758 nt759 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span70 000-70 758 ntGCF_004333635::NZ_SHQU01000030.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004333635::NZ_SHQU01000030.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHQU01000030.1All displayed genes belong to this local TCS context.
Neighborhood span70 000-70 758 nt759 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
70 000 nt70 758 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MCC10043_RS07250GCF_004333635#MCC10043_RS07250
RRNarLCurrent focus
70 000-70 758 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004333635#MCC10043_RS07250The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Sigma70_r4_22 domains in the representative PFAM annotation.
PFAM architecture for RROC_0705851
Simplified PFAM architecture for RROC_0705851
PFAM domain coverage: 165 / 252 aa (65.5%)
1 aa252 aa
Response_regSigma70_r4_2
- Simplified architecture: Response_reg + Sigma70_r4_2
- Raw architecture: Response_reg[36-149] | Sigma70_r4_2[181-231]
- Domain count: 2
- Matched identifier: RROC_0705851
- Positioned domains: Response_reg 36-149 ; Response_reg 36-149 ; Sigma70_r4_2 181-231 ; Sigma70_r4_2 181-231
Cluster members and taxonomy
Representative gene: GCF_004333635#MCC10043_RS07250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004333635
AssemblyASM433363v1 · Contighaploid
Genome composition2 623 861 bp · 59,5% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 22 · HK 9 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key