1 HisKA_3#1
212-275 aa · 64 aa · 14.3% of protein
Raw token
HisKA_3:212:0.0000000000000078:275:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10096_RS04240
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_004333045
ClassHKTypeClassicLength447 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004333045#MCC10096_RS04240Stable P2CS identifier used across views.
GenomeGCF_004333045Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length447 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 447 aa (36.5%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa447 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
322-420 aa · 99 aa · 22.1% of protein
Raw token
HATPase_c:322:0.000000214:420:99:109- Raw architecture: HisKA_3:212:0.0000000000000078:275:64:68#HATPase_c:322:0.000000214:420:99:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004333045::NZ_SHSP01000007.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span28899-30895Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC10096_0780RefSeq proteinWP_131207476.1
Context group ID
GCF_004333045::NZ_SHSP01000007.1::G00006Context members
MCC10096_RS04235MCC10096_RS04240
Partner locus tags
MCC10096_RS04235MCC10096_RS04240
Partner old locus tags
MCC10096_0779MCC10096_0780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_131207476.1Primary protein accession used for annex mappings.
UniProt accessionA0A4R0UJM4Primary UniProt accession resolved in the annex database.
UniProt IDA0A4R0UJM4_BIFLLDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10096_RS04240Primary locus identifier stored in the genes table.
Old locus tagMCC10096_0780Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SHSP01000007.1Sequence record reported by the local genomic context database.
Genomic interval29 552-30 895 nt1 344 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span28 899-30 895 ntGCF_004333045::NZ_SHSP01000007.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004333045::NZ_SHSP01000007.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHSP01000007.1All displayed genes belong to this local TCS context.
Neighborhood span28 899-30 895 nt1 997 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 899 nt30 895 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MCC10096_RS04235GCF_004333045#MCC10096_RS04235
RRNarL
28 899-29 552 nt · Reverse (-)
MCC10096_RS04240GCF_004333045#MCC10096_RS04240
HKClassicCurrent focus
29 552-30 895 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004333045#MCC10096_RS04240The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2002456
Simplified PFAM architecture for HKOC_2002456
PFAM domain coverage: 66 / 447 aa (14.8%)
1 aa447 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[212-277]
- Domain count: 1
- Matched identifier: HKOC_2002456
- Positioned domains: HisKA_3 212-277
Cluster members and taxonomy
Representative gene: GCF_004333045#MCC10096_RS04240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004333045
AssemblyASM433304v1 · Contighaploid
Genome composition2 571 288 bp · 59,5% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 22 · HK 10 · RR 12CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key