1 HisKA_3#1
225-288 aa · 64 aa · 13.9% of protein
Raw token
HisKA_3:225:0.0000000000000228:288:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10092_RS04125
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_004332925
ClassHKTypeClassicLength460 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004332925#MCC10092_RS04125Stable P2CS identifier used across views.
GenomeGCF_004332925Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length460 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 460 aa (39.8%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa460 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
335-453 aa · 119 aa · 25.9% of protein
Raw token
HATPase_c:335:0.0000000902:453:120:109- Raw architecture: HisKA_3:225:0.0000000000000228:288:64:68#HATPase_c:335:0.0000000902:453:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004332925::NZ_SHSL01000028.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span62830-64865Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC10092_0760RefSeq proteinWP_131231333.1
Context group ID
GCF_004332925::NZ_SHSL01000028.1::G00006Context members
MCC10092_RS04125MCC10092_RS04130
Partner locus tags
MCC10092_RS04125MCC10092_RS04130
Partner old locus tags
MCC10092_0760MCC10092_0761
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131231333.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10092_RS04125Primary locus identifier stored in the genes table.
Old locus tagMCC10092_0760Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SHSL01000028.1Sequence record reported by the local genomic context database.
Genomic interval62 830-64 212 nt1 383 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span62 830-64 865 ntGCF_004332925::NZ_SHSL01000028.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004332925::NZ_SHSL01000028.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHSL01000028.1All displayed genes belong to this local TCS context.
Neighborhood span62 830-64 865 nt2 036 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
62 830 nt64 865 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MCC10092_RS04125GCF_004332925#MCC10092_RS04125
HKClassicCurrent focus
62 830-64 212 nt · Forward (+)
MCC10092_RS04130GCF_004332925#MCC10092_RS04130
RRNarL
64 212-64 865 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004332925#MCC10092_RS04125The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1836986
Simplified PFAM architecture for HKOC_1836986
PFAM domain coverage: 66 / 460 aa (14.3%)
1 aa460 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[225-290]
- Domain count: 1
- Matched identifier: HKOC_1836986
- Positioned domains: HisKA_3 225-290
Cluster members and taxonomy
Representative gene: GCF_004332925#MCC10092_RS04125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004332925
AssemblyASM433292v1 · Contighaploid
Genome composition2 234 829 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 23 · HK 9 · RR 12CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key