1 HisKA_3#1
247-305 aa · 59 aa · 7.4% of protein
Raw token
HisKA_3:247:0.000000000000012:305:59:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10098_RS03520
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_004332835
ClassHKTypeClassicLength800 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004332835#MCC10098_RS03520Stable P2CS identifier used across views.
GenomeGCF_004332835Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length800 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage224 / 800 aa (28.0%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa800 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
348-441 aa · 94 aa · 11.8% of protein
Raw token
HATPase_c:348:0.000000000000211:441:110:1093 HisKA_3#3
697-767 aa · 71 aa · 8.9% of protein
Raw token
HisKA_3:697:0.0000263:767:71:68- Raw architecture: HisKA_3:247:0.000000000000012:305:59:68#HATPase_c:348:0.000000000000211:441:110:109#HisKA_3:697:0.0000263:767:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004332835::NZ_SHSR01000016.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4029-7405Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC10098_0649RefSeq proteinWP_237970700.1
Context group ID
GCF_004332835::NZ_SHSR01000016.1::G00005Context members
MCC10098_RS03520MCC10098_RS03525
Partner locus tags
MCC10098_RS03520MCC10098_RS03525
Partner old locus tags
MCC10098_0649MCC10098_0650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_237970700.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10098_RS03520Primary locus identifier stored in the genes table.
Old locus tagMCC10098_0649Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SHSR01000016.1Sequence record reported by the local genomic context database.
Genomic interval4 029-6 431 nt2 403 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 029-7 405 ntGCF_004332835::NZ_SHSR01000016.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004332835::NZ_SHSR01000016.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHSR01000016.1All displayed genes belong to this local TCS context.
Neighborhood span4 029-7 405 nt3 377 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 029 nt7 405 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MCC10098_RS03520GCF_004332835#MCC10098_RS03520
HKClassicCurrent focus
4 029-6 431 nt · Forward (+)
MCC10098_RS03525GCF_004332835#MCC10098_RS03525
RRNarL
6 515-7 405 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004332835#MCC10098_RS03520The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0556593
Simplified PFAM architecture for HKOC_0556593
PFAM domain coverage: 412 / 800 aa (51.5%)
1 aa800 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[16-141] | HisKA_3[247-308] | HATPase_c[348-440] | DUF7134[488-618]
- Domain count: 4
- Matched identifier: HKOC_0556593
- Positioned domains: DUF7134 16-141 ; HisKA_3 247-308 ; HATPase_c 348-440 ; DUF7134 488-618
Cluster members and taxonomy
Representative gene: GCF_004332835#MCC10098_RS03520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004332835
AssemblyASM433283v1 · Contighaploid
Genome composition2 326 671 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 18 · HK 9 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key