1 HisKA_3#1
83-141 aa · 59 aa · 9.0% of protein
Raw token
HisKA_3:83:0.00000000000000215:141:59:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10108_RS03865
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_004332665
ClassHKTypeClassicLength658 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004332665#MCC10108_RS03865Stable P2CS identifier used across views.
GenomeGCF_004332665Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length658 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage222 / 658 aa (33.7%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HATPase_c#2
184-275 aa · 92 aa · 14.0% of protein
Raw token
HATPase_c:184:0.000000000000239:275:108:1093 HisKA_3#3
534-604 aa · 71 aa · 10.8% of protein
Raw token
HisKA_3:534:0.0000241:604:71:68- Raw architecture: HisKA_3:83:0.00000000000000215:141:59:68#HATPase_c:184:0.000000000000239:275:108:109#HisKA_3:534:0.0000241:604:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004332665::NZ_SHSZ01000016.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-2891Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004332665::NZ_SHSZ01000016.1::G00005Context members
MCC10108_RS03865MCC10108_RS03870
Partner locus tags
MCC10108_RS03865MCC10108_RS03870
Partner old locus tags
MCC10108_0719
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131223874.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10108_RS03865Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_SHSZ01000016.1Sequence record reported by the local genomic context database.
Genomic interval1-1 979 nt1 979 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-2 891 ntGCF_004332665::NZ_SHSZ01000016.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004332665::NZ_SHSZ01000016.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHSZ01000016.1All displayed genes belong to this local TCS context.
Neighborhood span1-2 891 nt2 891 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt2 891 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MCC10108_RS03865GCF_004332665#MCC10108_RS03865
HKClassicCurrent focus
1-1 979 nt · Forward (+)
MCC10108_RS03870GCF_004332665#MCC10108_RS03870
RRNarL
2 001-2 891 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004333175#MCC10080_RS04035Use this link to inspect the representative gene detail.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0531013
Simplified PFAM architecture for HKOC_0531013
PFAM domain coverage: 411 / 819 aa (50.2%)
1 aa819 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[13-138] | HisKA_3[244-305] | HATPase_c[345-437] | DUF7134[485-614]
- Domain count: 4
- Matched identifier: HKOC_0531013
- Positioned domains: DUF7134 13-138 ; HisKA_3 244-305 ; HATPase_c 345-437 ; DUF7134 485-614
Cluster members and taxonomy
Representative gene: GCF_004333175#MCC10080_RS04035
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 4 over 4 total members. Page 1 / 1.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004332665
AssemblyASM433266v1 · Contighaploid
Genome composition2 418 752 bp · 60,5% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 18 · HK 9 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key