1 H_kinase_N#1
9-145 aa · 137 aa · 27.7% of protein
Raw token
H_kinase_N:9:3.33e-51:145:138:139P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10108_RS03360
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_004332665
ClassHKTypeClassicLength495 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004332665#MCC10108_RS03360Stable P2CS identifier used across views.
GenomeGCF_004332665Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
H_kinase_NPAS_4HisKA_2HATPase_c
Protein length495 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage414 / 495 aa (83.6%)Merged over positioned domains only.
Domain description1 H_kinase_N,1 PAS_4,1 HisKA_2,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation4 items
2 PAS_4#2
175-278 aa · 104 aa · 21.0% of protein
Raw token
PAS_4:175:0.00000000126:278:109:1103 HisKA_2#3
292-361 aa · 70 aa · 14.1% of protein
Raw token
HisKA_2:292:2.45e-30:361:71:764 HATPase_c#4
388-490 aa · 103 aa · 20.8% of protein
Raw token
HATPase_c:388:0.00000000000000167:490:112:109- Raw architecture: H_kinase_N:9:3.33e-51:145:138:139#PAS_4:175:0.00000000126:278:109:110#HisKA_2:292:2.45e-30:361:71:76#HATPase_c:388:0.00000000000000167:490:112:109
- Domain description: 1 H_kinase_N,1 PAS_4,1 HisKA_2,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004332665::NZ_SHSZ01000012.1::G00002
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span12000-13487Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC10108_0624RefSeq proteinWP_007051898.1
Context group ID
GCF_004332665::NZ_SHSZ01000012.1::G00002Context members
MCC10108_RS03360
Partner locus tags
MCC10108_RS03360
Partner old locus tags
MCC10108_0624
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007051898.1Primary protein accession used for annex mappings.
UniProt accessionA0AAV3FHR8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAV3FHR8_BIFLLDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10108_RS03360Primary locus identifier stored in the genes table.
Old locus tagMCC10108_0624Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SHSZ01000012.1Sequence record reported by the local genomic context database.
Genomic interval12 000-13 487 nt1 488 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12 000-13 487 ntGCF_004332665::NZ_SHSZ01000012.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004332665::NZ_SHSZ01000012.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHSZ01000012.1All displayed genes belong to this local TCS context.
Neighborhood span12 000-13 487 nt1 488 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 000 nt13 487 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MCC10108_RS03360GCF_004332665#MCC10108_RS03360
HKClassicCurrent focus
12 000-13 487 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003135#HMPREF0175_RS08190Use this link to inspect the representative gene detail.
PFAM architectureGAF_PdtaS + PAS_4 + HisKA_2 + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1504244
Simplified PFAM architecture for HKOC_1504244
PFAM domain coverage: 417 / 495 aa (84.2%)
1 aa495 aa
GAF_PdtaSPAS_4HisKA_2HATPase_c
- Simplified architecture: GAF_PdtaS + PAS_4 + HisKA_2 + HATPase_c
- Raw architecture: GAF_PdtaS[5-141] | PAS_4[173-278] | HisKA_2[292-363] | HATPase_c[388-489]
- Domain count: 4
- Matched identifier: HKOC_1504244
- Positioned domains: GAF_PdtaS 5-141 ; PAS_4 173-278 ; HisKA_2 292-363 ; HATPase_c 388-489
Cluster members and taxonomy
Representative gene: GCF_000003135#HMPREF0175_RS08190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004332665
AssemblyASM433266v1 · Contighaploid
Genome composition2 418 752 bp · 60,5% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 18 · HK 9 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key