1 HisKA#1
135-198 aa · 64 aa · 17.8% of protein
Raw token
HisKA:135:0.000000000000419:198:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0R25_RS03605
Histidine kinase, Classic
Clostridioides difficile · GCF_004318825
ClassHKTypeClassicLength360 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004318825#E0R25_RS03605Stable P2CS identifier used across views.
GenomeGCF_004318825Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length360 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 360 aa (44.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa360 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
248-344 aa · 97 aa · 26.9% of protein
Raw token
HATPase_c:248:3.54e-20:344:97:109- Raw architecture: HisKA:135:0.000000000000419:198:64:64#HATPase_c:248:3.54e-20:344:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004318825::NZ_BIWS01000016.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3946-5779Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004318825::NZ_BIWS01000016.1::G00013Context members
E0R25_RS03600E0R25_RS03605
Partner locus tags
E0R25_RS03600E0R25_RS03605
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131040641.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0R25_RS03605Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BIWS01000016.1Sequence record reported by the local genomic context database.
Genomic interval4 697-5 779 nt1 083 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 946-5 779 ntGCF_004318825::NZ_BIWS01000016.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004318825::NZ_BIWS01000016.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BIWS01000016.1All displayed genes belong to this local TCS context.
Neighborhood span3 946-5 779 nt1 834 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 946 nt5 779 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E0R25_RS03600GCF_004318825#E0R25_RS03600
RROmpR
3 946-4 647 nt · Forward (+)
E0R25_RS03605GCF_004318825#E0R25_RS03605
HKClassicCurrent focus
4 697-5 779 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004315905#E0P70_RS19890Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2651204
Simplified PFAM architecture for HKOC_2651204
PFAM domain coverage: 161 / 375 aa (42.9%)
1 aa375 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[151-213] | HATPase_c[263-360]
- Domain count: 2
- Matched identifier: HKOC_2651204
- Positioned domains: HisKA 151-213 ; HATPase_c 263-360
Cluster members and taxonomy
Representative gene: GCF_004315905#E0P70_RS19890
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 84 total members. Page 1 / 2.
GCF_004315905#E0P70_RS19890 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004318825
AssemblyASM431882v1 · Scaffoldhaploid
Genome composition4 112 375 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 47CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key