1 HisKA#1
145-208 aa · 64 aa · 17.3% of protein
Raw token
HisKA:145:0.000000000000368:208:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0N95_RS20155
Histidine kinase, Classic
Clostridioides difficile · GCF_004314185
ClassHKTypeClassicLength370 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004314185#E0N95_RS20155Stable P2CS identifier used across views.
GenomeGCF_004314185Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length370 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 370 aa (43.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa370 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
258-354 aa · 97 aa · 26.2% of protein
Raw token
HATPase_c:258:4.02e-20:354:97:109- Raw architecture: HisKA:145:0.000000000000368:208:64:64#HATPase_c:258:4.02e-20:354:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004314185::NZ_BINU01000184.1::G00063
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span119-1231Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004314185::NZ_BINU01000184.1::G00063Context members
E0N95_RS20155
Partner locus tags
E0N95_RS20155
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330564501.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0N95_RS20155Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BINU01000184.1Sequence record reported by the local genomic context database.
Genomic interval119-1 231 nt1 113 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span119-1 231 ntGCF_004314185::NZ_BINU01000184.1::G00063
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004314185::NZ_BINU01000184.1::G00063Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BINU01000184.1All displayed genes belong to this local TCS context.
Neighborhood span119-1 231 nt1 113 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
119 nt1 231 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E0N95_RS20155GCF_004314185#E0N95_RS20155
HKClassicCurrent focus
119-1 231 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004315905#E0P70_RS19890Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2651204
Simplified PFAM architecture for HKOC_2651204
PFAM domain coverage: 161 / 375 aa (42.9%)
1 aa375 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[151-213] | HATPase_c[263-360]
- Domain count: 2
- Matched identifier: HKOC_2651204
- Positioned domains: HisKA 151-213 ; HATPase_c 263-360
Cluster members and taxonomy
Representative gene: GCF_004315905#E0P70_RS19890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004314185
AssemblyASM431418v1 · Scaffoldhaploid
Genome composition4 206 178 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 105 · HK 50 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key