1 HisKA#1
231-294 aa · 64 aa · 14.0% of protein
Raw token
HisKA:231:0.000000000413:294:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0Q65_RS04145
Histidine kinase, Classic
Clostridioides difficile · GCF_004317945
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004317945#E0Q65_RS04145Stable P2CS identifier used across views.
GenomeGCF_004317945Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 458 aa (38.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
345-457 aa · 113 aa · 24.7% of protein
Raw token
HATPase_c:345:5.66e-24:457:113:109- Raw architecture: HisKA:231:0.000000000413:294:64:64#HATPase_c:345:5.66e-24:457:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004317945::NZ_BIVA01000013.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21222-23308Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004317945::NZ_BIVA01000013.1::G00013Context members
E0Q65_RS04140E0Q65_RS04145
Partner locus tags
E0Q65_RS04140E0Q65_RS04145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131037178.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0Q65_RS04145Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BIVA01000013.1Sequence record reported by the local genomic context database.
Genomic interval21 932-23 308 nt1 377 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span21 222-23 308 ntGCF_004317945::NZ_BIVA01000013.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004317945::NZ_BIVA01000013.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BIVA01000013.1All displayed genes belong to this local TCS context.
Neighborhood span21 222-23 308 nt2 087 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 222 nt23 308 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E0Q65_RS04140GCF_004317945#E0Q65_RS04140
RROmpR
21 222-21 929 nt · Forward (+)
E0Q65_RS04145GCF_004317945#E0Q65_RS04145
HKClassicCurrent focus
21 932-23 308 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004317945#E0Q65_RS04145The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1863013
Simplified PFAM architecture for HKOC_1863013
PFAM domain coverage: 176 / 458 aa (38.4%)
1 aa458 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[232-295] | HATPase_c[345-456]
- Domain count: 2
- Matched identifier: HKOC_1863013
- Positioned domains: HisKA 232-295 ; HATPase_c 345-456
Cluster members and taxonomy
Representative gene: GCF_004317945#E0Q65_RS04145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004317945
AssemblyASM431794v1 · Scaffoldhaploid
Genome composition3 989 507 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key