1 HisKA#1
1-56 aa · 56 aa · 26.0% of protein
Raw token
HisKA:1:0.0000000105:56:56:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0Q75_RS19425
Histidine kinase, Classic
Clostridioides difficile · GCF_004317905
ClassHKTypeClassicLength215 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004317905#E0Q75_RS19425Stable P2CS identifier used across views.
GenomeGCF_004317905Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 215 aa (75.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
102-208 aa · 107 aa · 49.8% of protein
Raw token
HATPase_c:102:4.67e-23:208:107:109- Raw architecture: HisKA:1:0.0000000105:56:56:64#HATPase_c:102:4.67e-23:208:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004317905::NZ_BIUY01000166.1::G00058
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1037-1684Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004317905::NZ_BIUY01000166.1::G00058Context members
E0Q75_RS19425
Partner locus tags
E0Q75_RS19425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131038304.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0Q75_RS19425Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BIUY01000166.1Sequence record reported by the local genomic context database.
Genomic interval1 037-1 684 nt648 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 037-1 684 ntGCF_004317905::NZ_BIUY01000166.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004317905::NZ_BIUY01000166.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BIUY01000166.1All displayed genes belong to this local TCS context.
Neighborhood span1 037-1 684 nt648 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 037 nt1 684 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E0Q75_RS19425GCF_004317905#E0Q75_RS19425
HKClassicCurrent focus
1 037-1 684 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900688265#E1132_RS11640Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1503913
Simplified PFAM architecture for HKOC_1503913
PFAM domain coverage: 169 / 496 aa (34.1%)
1 aa496 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[275-337] | HATPase_c[384-489]
- Domain count: 2
- Matched identifier: HKOC_1503913
- Positioned domains: HisKA 275-337 ; HATPase_c 384-489
Cluster members and taxonomy
Representative gene: GCF_900688265#E1132_RS11640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004317905
AssemblyASM431790v1 · Scaffoldhaploid
Genome composition4 125 467 bp · 28,0% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 47 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key