1 HisKA#1
51-98 aa · 48 aa · 18.4% of protein
Raw token
HisKA:51:0.00000569:98:53:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0P73_RS02650
Histidine kinase, Classic
Clostridioides difficile · GCF_004315785
ClassHKTypeClassicLength261 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004315785#E0P73_RS02650Stable P2CS identifier used across views.
GenomeGCF_004315785Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length261 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 261 aa (60.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa261 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
144-252 aa · 109 aa · 41.8% of protein
Raw token
HATPase_c:144:2.11e-23:252:109:109- Raw architecture: HisKA:51:0.00000569:98:53:64#HATPase_c:144:2.11e-23:252:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004315785::NZ_BIQW01000002.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span255389-257092Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004315785::NZ_BIQW01000002.1::G00008Context members
E0P73_RS02650E0P73_RS02655
Partner locus tags
E0P73_RS02650E0P73_RS02655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330562256.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0P73_RS02650Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BIQW01000002.1Sequence record reported by the local genomic context database.
Genomic interval255 389-256 174 nt786 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span255 389-257 092 ntGCF_004315785::NZ_BIQW01000002.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004315785::NZ_BIQW01000002.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BIQW01000002.1All displayed genes belong to this local TCS context.
Neighborhood span255 389-257 092 nt1 704 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
255 389 nt257 092 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E0P73_RS02650GCF_004315785#E0P73_RS02650
HKClassicCurrent focus
255 389-256 174 nt · Reverse (-)
E0P73_RS02655GCF_004315785#E0P73_RS02655
RROmpR
256 400-257 092 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004315785#E0P73_RS02650The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2913328
Simplified PFAM architecture for HKOC_2913328
PFAM domain coverage: 109 / 261 aa (41.8%)
1 aa261 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[145-253]
- Domain count: 1
- Matched identifier: HKOC_2913328
- Positioned domains: HATPase_c 145-253
Cluster members and taxonomy
Representative gene: GCF_004315785#E0P73_RS02650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004315785
AssemblyASM431578v1 · Scaffoldhaploid
Genome composition4 342 513 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 109 · HK 52 · RR 56CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key