1 Response_reg#1
4-109 aa · 106 aa · 48.0% of protein
Raw token
Response_reg:4:9.06e-30:109:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0O41_RS01115
Response regulator OmpR family
Clostridioides difficile · GCF_004314545
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004314545#E0O41_RS01115Stable P2CS identifier used across views.
GenomeGCF_004314545Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 221 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-218 aa · 74 aa · 33.5% of protein
Raw token
Trans_reg_C:145:2.25e-23:218:75:77- Raw architecture: Response_reg:4:9.06e-30:109:110:111#Trans_reg_C:145:2.25e-23:218:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004314545::NZ_BIOM01000002.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span108682-109347Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004314545::NZ_BIOM01000002.1::G00004Context members
E0O41_RS01115
Partner locus tags
E0O41_RS01115
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_103951062.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0O41_RS01115Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BIOM01000002.1Sequence record reported by the local genomic context database.
Genomic interval108 682-109 347 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span108 682-109 347 ntGCF_004314545::NZ_BIOM01000002.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004314545::NZ_BIOM01000002.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BIOM01000002.1All displayed genes belong to this local TCS context.
Neighborhood span108 682-109 347 nt666 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
108 682 nt109 347 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E0O41_RS01115GCF_004314545#E0O41_RS01115
RROmpRCurrent focus
108 682-109 347 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004314545#E0O41_RS01115The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1688916
Simplified PFAM architecture for RROC_1688916
PFAM domain coverage: 180 / 221 aa (81.4%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-109] | Trans_reg_C[145-218]
- Domain count: 2
- Matched identifier: RROC_1688916
- Positioned domains: Response_reg 4-109 ; Response_reg 4-109 ; Trans_reg_C 145-218 ; Trans_reg_C 145-218
Cluster members and taxonomy
Representative gene: GCF_004314545#E0O41_RS01115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004314545
AssemblyASM431454v1 · Scaffoldhaploid
Genome composition4 035 297 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 49 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key