1 Response_reg#1
3-115 aa · 113 aa · 49.6% of protein
Raw token
Response_reg:3:5.33e-28:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0O41_RS01050
Response regulator OmpR family
Clostridioides difficile · GCF_004314545
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004314545#E0O41_RS01050Stable P2CS identifier used across views.
GenomeGCF_004314545Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 228 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-223 aa · 75 aa · 32.9% of protein
Raw token
Trans_reg_C:149:1.88e-19:223:76:77- Raw architecture: Response_reg:3:5.33e-28:115:113:111#Trans_reg_C:149:1.88e-19:223:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004314545::NZ_BIOM01000002.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span95072-97044Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004314545::NZ_BIOM01000002.1::G00002Context members
E0O41_RS01050E0O41_RS01055
Partner locus tags
E0O41_RS01050E0O41_RS01055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_077727557.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0O41_RS01050Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BIOM01000002.1Sequence record reported by the local genomic context database.
Genomic interval95 072-95 758 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span95 072-97 044 ntGCF_004314545::NZ_BIOM01000002.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004314545::NZ_BIOM01000002.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BIOM01000002.1All displayed genes belong to this local TCS context.
Neighborhood span95 072-97 044 nt1 973 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
95 072 nt97 044 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E0O41_RS01050GCF_004314545#E0O41_RS01050
RROmpRCurrent focus
95 072-95 758 nt · Forward (+)
E0O41_RS01055GCF_004314545#E0O41_RS01055
HKClassic
95 752-97 044 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004314545#E0O41_RS01050The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1316760
Simplified PFAM architecture for RROC_1316760
PFAM domain coverage: 187 / 228 aa (82.0%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-115] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1316760
- Positioned domains: Response_reg 3-115 ; Response_reg 3-115 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_004314545#E0O41_RS01050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004314545
AssemblyASM431454v1 · Scaffoldhaploid
Genome composition4 035 297 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 49 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key