1 HisKA#1
113-179 aa · 67 aa · 13.7% of protein
Raw token
HisKA:113:1.41e-16:179:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EYA86_RS08205
Histidine kinase, Hybrid
Mediterraneibacter sp. gm002 · GCF_004299205
ClassHKTypeHybridLength489 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004299205#EYA86_RS08205Stable P2CS identifier used across views.
GenomeGCF_004299205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length489 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage296 / 489 aa (60.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa489 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
232-343 aa · 112 aa · 22.9% of protein
Raw token
HATPase_c:232:3.62e-28:343:112:1093 Response_reg#3
369-485 aa · 117 aa · 23.9% of protein
Raw token
Response_reg:369:7.03e-30:485:117:111- Raw architecture: HisKA:113:1.41e-16:179:67:64#HATPase_c:232:3.62e-28:343:112:109#Response_reg:369:7.03e-30:485:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004299205::NZ_SIHS01000010.1::G00042
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span77048-78517Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEYA86_08205RefSeq proteinWP_172696964.1
Context group ID
GCF_004299205::NZ_SIHS01000010.1::G00042Context members
EYA86_RS08205
Partner locus tags
EYA86_RS08205
Partner old locus tags
EYA86_08205
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_172696964.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEYA86_RS08205Primary locus identifier stored in the genes table.
Old locus tagEYA86_08205Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SIHS01000010.1Sequence record reported by the local genomic context database.
Genomic interval77 048-78 517 nt1 470 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span77 048-78 517 ntGCF_004299205::NZ_SIHS01000010.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004299205::NZ_SIHS01000010.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SIHS01000010.1All displayed genes belong to this local TCS context.
Neighborhood span77 048-78 517 nt1 470 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
77 048 nt78 517 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EYA86_RS08205GCF_004299205#EYA86_RS08205
HKHybridCurrent focus
77 048-78 517 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003628495#D8Q48_RS06610Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1543212
Simplified PFAM architecture for HKOC_1543212
PFAM domain coverage: 298 / 489 aa (60.9%)
1 aa489 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[113-179] | HATPase_c[227-341] | Response_reg[369-484]
- Domain count: 3
- Matched identifier: HKOC_1543212
- Positioned domains: HisKA 113-179 ; HATPase_c 227-341 ; Response_reg 369-484
Cluster members and taxonomy
Representative gene: GCF_003628495#D8Q48_RS06610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 527 876 · GCF_004299205
AssemblyASM429920v1 · Contighaploid
Genome composition3 568 648 bp · 38,5% GCMediterraneibacter sp. gm002
Signal transduction countsGenes 81 · HK 42 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key