1 HisKA#1
308-374 aa · 67 aa · 8.3% of protein
Raw token
HisKA:308:7.09e-17:374:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EYA86_RS00430
Histidine kinase, Hybrid
Mediterraneibacter sp. gm002 · GCF_004299205
ClassHKTypeHybridLength804 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004299205#EYA86_RS00430Stable P2CS identifier used across views.
GenomeGCF_004299205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length804 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage370 / 804 aa (46.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa804 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
421-535 aa · 115 aa · 14.3% of protein
Raw token
HATPase_c:421:2.53e-30:535:115:1093 Response_reg#3
555-671 aa · 117 aa · 14.6% of protein
Raw token
Response_reg:555:3.42e-18:671:117:1114 Response_reg#4
699-769 aa · 71 aa · 8.8% of protein
Raw token
Response_reg:699:2.19e-18:769:71:111- Raw architecture: HisKA:308:7.09e-17:374:67:64#HATPase_c:421:2.53e-30:535:115:109#Response_reg:555:3.42e-18:671:117:111#Response_reg:699:2.19e-18:769:71:111
- Domain description: 1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004299205::NZ_SIHS01000001.1::G00014
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span105310-107724Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEYA86_00430RefSeq proteinWP_330514117.1
Context group ID
GCF_004299205::NZ_SIHS01000001.1::G00014Context members
EYA86_RS00430
Partner locus tags
EYA86_RS00430
Partner old locus tags
EYA86_00430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330514117.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEYA86_RS00430Primary locus identifier stored in the genes table.
Old locus tagEYA86_00430Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SIHS01000001.1Sequence record reported by the local genomic context database.
Genomic interval105 310-107 724 nt2 415 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span105 310-107 724 ntGCF_004299205::NZ_SIHS01000001.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004299205::NZ_SIHS01000001.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SIHS01000001.1All displayed genes belong to this local TCS context.
Neighborhood span105 310-107 724 nt2 415 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
105 310 nt107 724 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EYA86_RS00430GCF_004299205#EYA86_RS00430
HKHybridCurrent focus
105 310-107 724 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003628495#D8Q48_RS00430Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0550140
Simplified PFAM architecture for HKOC_0550140
PFAM domain coverage: 370 / 804 aa (46.0%)
1 aa804 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[308-374] | HATPase_c[421-537] | Response_reg[555-670] | Response_reg[699-768]
- Domain count: 4
- Matched identifier: HKOC_0550140
- Positioned domains: HisKA 308-374 ; HATPase_c 421-537 ; Response_reg 555-670 ; Response_reg 699-768
Cluster members and taxonomy
Representative gene: GCF_003628495#D8Q48_RS00430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 527 876 · GCF_004299205
AssemblyASM429920v1 · Contighaploid
Genome composition3 568 648 bp · 38,5% GCMediterraneibacter sp. gm002
Signal transduction countsGenes 81 · HK 42 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key