1 Response_reg#1
5-114 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:5:9.08e-28:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EYA86_RS04515
Response regulator OmpR family
Mediterraneibacter sp. gm002 · GCF_004299205
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004299205#EYA86_RS04515Stable P2CS identifier used across views.
GenomeGCF_004299205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 225 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-218 aa · 72 aa · 32.0% of protein
Raw token
Trans_reg_C:147:3.5e-23:218:76:77- Raw architecture: Response_reg:5:9.08e-28:114:110:111#Trans_reg_C:147:3.5e-23:218:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004299205::NZ_SIHS01000004.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span33199-34768Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEYA86_04515RefSeq proteinWP_117989698.1
Context group ID
GCF_004299205::NZ_SIHS01000004.1::G00033Context members
EYA86_RS04515EYA86_RS04520
Partner locus tags
EYA86_RS04515EYA86_RS04520
Partner old locus tags
EYA86_04515EYA86_04520
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117989698.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEYA86_RS04515Primary locus identifier stored in the genes table.
Old locus tagEYA86_04515Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SIHS01000004.1Sequence record reported by the local genomic context database.
Genomic interval33 199-33 876 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span33 199-34 768 ntGCF_004299205::NZ_SIHS01000004.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004299205::NZ_SIHS01000004.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SIHS01000004.1All displayed genes belong to this local TCS context.
Neighborhood span33 199-34 768 nt1 570 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 199 nt34 768 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EYA86_RS04515GCF_004299205#EYA86_RS04515
RROmpRCurrent focus
33 199-33 876 nt · Forward (+)
EYA86_RS04520GCF_004299205#EYA86_RS04520
HKClassic
33 869-34 768 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003628495#D8Q48_RS04145Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1480435
Simplified PFAM architecture for RROC_1480435
PFAM domain coverage: 181 / 225 aa (80.4%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[148-219]
- Domain count: 2
- Matched identifier: RROC_1480435
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 148-219 ; Trans_reg_C 148-219
Cluster members and taxonomy
Representative gene: GCF_003628495#D8Q48_RS04145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 527 876 · GCF_004299205
AssemblyASM429920v1 · Contighaploid
Genome composition3 568 648 bp · 38,5% GCMediterraneibacter sp. gm002
Signal transduction countsGenes 81 · HK 42 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key