1 HisKA#1
347-413 aa · 67 aa · 9.0% of protein
Raw token
HisKA:347:0.00000000000000288:413:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EYA86_RS03795
Histidine kinase, Hybrid
Mediterraneibacter sp. gm002 · GCF_004299205
ClassHKTypeHybridLength742 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004299205#EYA86_RS03795Stable P2CS identifier used across views.
GenomeGCF_004299205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length742 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage304 / 742 aa (41.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa742 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
460-578 aa · 119 aa · 16.0% of protein
Raw token
HATPase_c:460:9.1e-25:578:119:1093 Response_reg#3
600-717 aa · 118 aa · 15.9% of protein
Raw token
Response_reg:600:1.32e-28:717:118:111- Raw architecture: HisKA:347:0.00000000000000288:413:67:64#HATPase_c:460:9.1e-25:578:119:109#Response_reg:600:1.32e-28:717:118:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004299205::NZ_SIHS01000002.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span155391-159728Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEYA86_03795RefSeq proteinWP_121055869.1
Context group ID
GCF_004299205::NZ_SIHS01000002.1::G00027Context members
EYA86_RS03795EYA86_RS03800
Partner locus tags
EYA86_RS03795EYA86_RS03800
Partner old locus tags
EYA86_03795EYA86_03800
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_121055869.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEYA86_RS03795Primary locus identifier stored in the genes table.
Old locus tagEYA86_03795Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SIHS01000002.1Sequence record reported by the local genomic context database.
Genomic interval155 391-157 619 nt2 229 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span155 391-159 728 ntGCF_004299205::NZ_SIHS01000002.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004299205::NZ_SIHS01000002.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SIHS01000002.1All displayed genes belong to this local TCS context.
Neighborhood span155 391-159 728 nt4 338 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
155 391 nt159 728 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EYA86_RS03795GCF_004299205#EYA86_RS03795
HKHybridCurrent focus
155 391-157 619 nt · Forward (+)
EYA86_RS03800GCF_004299205#EYA86_RS03800
RRRpfG
157 650-159 728 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003628495#D8Q48_RS06045Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0687551
Simplified PFAM architecture for HKOC_0687551
PFAM domain coverage: 300 / 742 aa (40.4%)
1 aa742 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[347-413] | HATPase_c[462-577] | Response_reg[600-716]
- Domain count: 3
- Matched identifier: HKOC_0687551
- Positioned domains: HisKA 347-413 ; HATPase_c 462-577 ; Response_reg 600-716
Cluster members and taxonomy
Representative gene: GCF_003628495#D8Q48_RS06045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 527 876 · GCF_004299205
AssemblyASM429920v1 · Contighaploid
Genome composition3 568 648 bp · 38,5% GCMediterraneibacter sp. gm002
Signal transduction countsGenes 81 · HK 42 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key