1 SBP_bac_3#1
52-253 aa · 202 aa · 21.4% of protein
Raw token
SBP_bac_3:52:1.76e-30:253:212:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EYA86_RS02935
Histidine kinase, Hybrid
Mediterraneibacter sp. gm002 · GCF_004299205
ClassHKTypeHybridLength942 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004299205#EYA86_RS02935Stable P2CS identifier used across views.
GenomeGCF_004299205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length942 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage704 / 942 aa (74.7%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa942 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
287-485 aa · 199 aa · 21.1% of protein
Raw token
SBP_bac_3:287:0.000000000343:485:216:2243 HisKA#3
566-631 aa · 66 aa · 7.0% of protein
Raw token
HisKA:566:6.04e-20:631:66:644 HATPase_c#4
678-796 aa · 119 aa · 12.6% of protein
Raw token
HATPase_c:678:1.61e-28:796:120:1095 Response_reg#5
819-936 aa · 118 aa · 12.5% of protein
Raw token
Response_reg:819:3.27e-30:936:118:111- Raw architecture: SBP_bac_3:52:1.76e-30:253:212:224#SBP_bac_3:287:0.000000000343:485:216:224#HisKA:566:6.04e-20:631:66:64#HATPase_c:678:1.61e-28:796:120:109#Response_reg:819:3.27e-30:936:118:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004299205::NZ_SIHS01000001.1::G00019
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span669318-674574Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEYA86_02935RefSeq proteinWP_118688965.1
Context group ID
GCF_004299205::NZ_SIHS01000001.1::G00019Context members
EYA86_RS02935EYA86_RS02940
Partner locus tags
EYA86_RS02935EYA86_RS02940
Partner old locus tags
EYA86_02935EYA86_02940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118688965.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEYA86_RS02935Primary locus identifier stored in the genes table.
Old locus tagEYA86_02935Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SIHS01000001.1Sequence record reported by the local genomic context database.
Genomic interval669 318-672 146 nt2 829 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span669 318-674 574 ntGCF_004299205::NZ_SIHS01000001.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004299205::NZ_SIHS01000001.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SIHS01000001.1All displayed genes belong to this local TCS context.
Neighborhood span669 318-674 574 nt5 257 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
669 318 nt674 574 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EYA86_RS02935GCF_004299205#EYA86_RS02935
HKHybridCurrent focus
669 318-672 146 nt · Reverse (-)
EYA86_RS02940GCF_004299205#EYA86_RS02940
HKHybrid
672 430-674 574 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003628495#D8Q48_RS02940Use this link to inspect the representative gene detail.
PFAM architectureSBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0338163
Simplified PFAM architecture for HKOC_0338163
PFAM domain coverage: 703 / 942 aa (74.6%)
1 aa942 aa
SBP_bac_3SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[49-241] | SBP_bac_3[282-490] | HisKA[566-631] | HATPase_c[679-795] | Response_reg[819-936]
- Domain count: 5
- Matched identifier: HKOC_0338163
- Positioned domains: SBP_bac_3 49-241 ; SBP_bac_3 282-490 ; HisKA 566-631 ; HATPase_c 679-795 ; Response_reg 819-936
Cluster members and taxonomy
Representative gene: GCF_003628495#D8Q48_RS02940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 527 876 · GCF_004299205
AssemblyASM429920v1 · Contighaploid
Genome composition3 568 648 bp · 38,5% GCMediterraneibacter sp. gm002
Signal transduction countsGenes 81 · HK 42 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key