1 Response_reg#1
8-116 aa · 109 aa · 48.2% of protein
Raw token
Response_reg:8:0.000000000505:116:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EAI80_RS10900
Response regulator OmpR family
Catenibacterium sp. co_0103 · GCF_004168205
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004168205#EAI80_RS10900Stable P2CS identifier used across views.
GenomeGCF_004168205Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 226 aa (78.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-215 aa · 68 aa · 30.1% of protein
Raw token
Trans_reg_C:148:0.00000000000000297:215:68:77- Raw architecture: Response_reg:8:0.000000000505:116:110:111#Trans_reg_C:148:0.00000000000000297:215:68:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004168205::NZ_RCYB01000090.1::G00018
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span4514-5194Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEAI80_11000RefSeq proteinWP_129982038.1
Context group ID
GCF_004168205::NZ_RCYB01000090.1::G00018Context members
EAI80_RS10900
Partner locus tags
EAI80_RS10900
Partner old locus tags
EAI80_11000
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_129982038.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEAI80_RS10900Primary locus identifier stored in the genes table.
Old locus tagEAI80_11000Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RCYB01000090.1Sequence record reported by the local genomic context database.
Genomic interval4 514-5 194 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 514-5 194 ntGCF_004168205::NZ_RCYB01000090.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004168205::NZ_RCYB01000090.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RCYB01000090.1All displayed genes belong to this local TCS context.
Neighborhood span4 514-5 194 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 514 nt5 194 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EAI80_RS10900GCF_004168205#EAI80_RS10900
RROmpRCurrent focus
4 514-5 194 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004168205#EAI80_RS10900The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1423067
Simplified PFAM architecture for RROC_1423067
PFAM domain coverage: 182 / 226 aa (80.5%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[8-115] | Trans_reg_C[149-222]
- Domain count: 2
- Matched identifier: RROC_1423067
- Positioned domains: Response_reg 8-115 ; Response_reg 8-115 ; Trans_reg_C 149-222 ; Trans_reg_C 149-222
Cluster members and taxonomy
Representative gene: GCF_004168205#EAI80_RS10900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 478 954 · GCF_004168205
AssemblyASM416820v1 · Contighaploid
Genome composition2 540 390 bp · 35,0% GCCatenibacterium sp. co_0103
Signal transduction countsGenes 40 · HK 18 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key