1 Response_reg#1
7-116 aa · 110 aa · 44.7% of protein
Raw token
Response_reg:7:1.48e-39:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EAI80_RS05155
Response regulator OmpR family
Catenibacterium sp. co_0103 · GCF_004168205
ClassRRTypeOmpRLength246 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004168205#EAI80_RS05155Stable P2CS identifier used across views.
GenomeGCF_004168205Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length246 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 246 aa (75.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa246 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-228 aa · 76 aa · 30.9% of protein
Raw token
Trans_reg_C:153:4.49e-24:228:77:77- Raw architecture: Response_reg:7:1.48e-39:116:111:111#Trans_reg_C:153:4.49e-24:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004168205::NZ_RCYB01000020.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5271-7953Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEAI80_05210RefSeq proteinWP_238634437.1
Context group ID
GCF_004168205::NZ_RCYB01000020.1::G00015Context members
EAI80_RS05155EAI80_RS05160
Partner locus tags
EAI80_RS05155EAI80_RS05160
Partner old locus tags
EAI80_05210EAI80_05215
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_238634437.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEAI80_RS05155Primary locus identifier stored in the genes table.
Old locus tagEAI80_05210Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RCYB01000020.1Sequence record reported by the local genomic context database.
Genomic interval5 271-6 011 nt741 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 271-7 953 ntGCF_004168205::NZ_RCYB01000020.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004168205::NZ_RCYB01000020.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RCYB01000020.1All displayed genes belong to this local TCS context.
Neighborhood span5 271-7 953 nt2 683 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 271 nt7 953 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EAI80_RS05155GCF_004168205#EAI80_RS05155
RROmpRCurrent focus
5 271-6 011 nt · Forward (+)
EAI80_RS05160GCF_004168205#EAI80_RS05160
HKClassic
5 992-7 953 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004168205#EAI80_RS05155The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0774995
Simplified PFAM architecture for RROC_0774995
PFAM domain coverage: 185 / 246 aa (75.2%)
1 aa246 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-116] | Trans_reg_C[154-228]
- Domain count: 2
- Matched identifier: RROC_0774995
- Positioned domains: Response_reg 7-116 ; Response_reg 7-116 ; Trans_reg_C 154-228 ; Trans_reg_C 154-228
Cluster members and taxonomy
Representative gene: GCF_004168205#EAI80_RS05155
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 478 954 · GCF_004168205
AssemblyASM416820v1 · Contighaploid
Genome composition2 540 390 bp · 35,0% GCCatenibacterium sp. co_0103
Signal transduction countsGenes 40 · HK 18 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key