1 Response_reg#1
3-112 aa · 110 aa · 48.5% of protein
Raw token
Response_reg:3:4.69e-32:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EAI80_RS04810
Response regulator OmpR family
Catenibacterium sp. co_0103 · GCF_004168205
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004168205#EAI80_RS04810Stable P2CS identifier used across views.
GenomeGCF_004168205Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 227 aa (81.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-223 aa · 75 aa · 33.0% of protein
Raw token
Trans_reg_C:149:1.02e-26:223:75:77- Raw architecture: Response_reg:3:4.69e-32:112:111:111#Trans_reg_C:149:1.02e-26:223:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004168205::NZ_RCYB01000018.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11436-13238Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEAI80_04865RefSeq proteinWP_192924004.1
Context group ID
GCF_004168205::NZ_RCYB01000018.1::G00014Context members
EAI80_RS04805EAI80_RS04810
Partner locus tags
EAI80_RS04805EAI80_RS04810
Partner old locus tags
EAI80_04860EAI80_04865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_192924004.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEAI80_RS04810Primary locus identifier stored in the genes table.
Old locus tagEAI80_04865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RCYB01000018.1Sequence record reported by the local genomic context database.
Genomic interval12 555-13 238 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 436-13 238 ntGCF_004168205::NZ_RCYB01000018.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004168205::NZ_RCYB01000018.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RCYB01000018.1All displayed genes belong to this local TCS context.
Neighborhood span11 436-13 238 nt1 803 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 436 nt13 238 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EAI80_RS04805GCF_004168205#EAI80_RS04805
HKClassic
11 436-12 542 nt · Reverse (-)
EAI80_RS04810GCF_004168205#EAI80_RS04810
RROmpRCurrent focus
12 555-13 238 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004168205#EAI80_RS04810The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1368555
Simplified PFAM architecture for RROC_1368555
PFAM domain coverage: 186 / 227 aa (81.9%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[149-224]
- Domain count: 2
- Matched identifier: RROC_1368555
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 149-224 ; Trans_reg_C 149-224
Cluster members and taxonomy
Representative gene: GCF_004168205#EAI80_RS04810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 478 954 · GCF_004168205
AssemblyASM416820v1 · Contighaploid
Genome composition2 540 390 bp · 35,0% GCCatenibacterium sp. co_0103
Signal transduction countsGenes 40 · HK 18 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key