1 Response_reg#1
6-114 aa · 109 aa · 40.8% of protein
Raw token
Response_reg:6:2.84e-22:114:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EPC61_RS03190
Response regulator OmpR family
Enterococcus faecalis · GCF_003996775
ClassRRTypeOmpRLength267 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003996775#EPC61_RS03190Stable P2CS identifier used across views.
GenomeGCF_003996775Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
External referencesMIST4 EPC61_RS03190MIST4
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length267 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 267 aa (68.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa267 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
158-231 aa · 74 aa · 27.7% of protein
Raw token
Trans_reg_C:158:1.76e-29:231:75:77- Raw architecture: Response_reg:6:2.84e-22:114:109:111#Trans_reg_C:158:1.76e-29:231:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003996775::NZ_RJJP02000002.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span43245-43964Genomic interval covered by the local TCS group.
Context group ID
GCF_003996775::NZ_RJJP02000002.1::G00011Context members
EPC61_RS03190
Partner locus tags
EPC61_RS03190
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEPC61_RS03190Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_RJJP02000002.1Sequence record reported by the local genomic context database.
Genomic interval43 245-43 964 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span43 245-43 964 ntGCF_003996775::NZ_RJJP02000002.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003996775::NZ_RJJP02000002.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RJJP02000002.1All displayed genes belong to this local TCS context.
Neighborhood span43 245-43 964 nt720 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 245 nt43 964 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EPC61_RS03190GCF_003996775#EPC61_RS03190
RROmpRCurrent focus
43 245-43 964 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003996775#EPC61_RS03190The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0623731
Simplified PFAM architecture for RROC_0623731
PFAM domain coverage: 183 / 267 aa (68.5%)
1 aa267 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[158-231]
- Domain count: 2
- Matched identifier: RROC_0623731
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 158-231 ; Trans_reg_C 158-231
Cluster members and taxonomy
Representative gene: GCF_003996775#EPC61_RS03190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 351 · GCF_003996775
AssemblyASM399677v2 · Contighaploid
Genome composition3 072 615 bp · 37,5% GCEnterococcus faecalis
Signal transduction countsGenes 26 · HK 11 · RR 15CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key