1 PAS_9#1
29-125 aa · 97 aa · 13.8% of protein
Raw token
PAS_9:29:0.000000191:125:97:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D7V67_RS13625
Histidine kinase, Classic
Clostridium paraputrificum · GCF_003611795
ClassHKTypeClassicLength701 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003611795#D7V67_RS13625Stable P2CS identifier used across views.
GenomeGCF_003611795Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
PAS_9PASHisKAHATPase_c
Protein length701 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage386 / 701 aa (55.1%)Merged over positioned domains only.
Domain description1 PAS_9,1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa701 aa
Domain-by-domain annotation4 items
2 PAS#2
318-421 aa · 104 aa · 14.8% of protein
Raw token
PAS:318:0.0000537:421:110:1133 HisKA#3
440-510 aa · 71 aa · 10.1% of protein
Raw token
HisKA:440:4.86e-16:510:71:644 HATPase_c#4
557-670 aa · 114 aa · 16.3% of protein
Raw token
HATPase_c:557:2.1e-29:670:114:109- Raw architecture: PAS_9:29:0.000000191:125:97:102#PAS:318:0.0000537:421:110:113#HisKA:440:4.86e-16:510:71:64#HATPase_c:557:2.1e-29:670:114:109
- Domain description: 1 PAS_9,1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003611795::NZ_RAYJ01000015.1::G00004
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span45446-47551Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD7V67_13625RefSeq proteinWP_065254258.1
Context group ID
GCF_003611795::NZ_RAYJ01000015.1::G00004Context members
D7V67_RS13625
Partner locus tags
D7V67_RS13625
Partner old locus tags
D7V67_13625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_065254258.1Primary protein accession used for annex mappings.
UniProt accessionA0A1B8RSN2Primary UniProt accession resolved in the annex database.
UniProt IDA0A1B8RSN2_9CLOTDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD7V67_RS13625Primary locus identifier stored in the genes table.
Old locus tagD7V67_13625Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RAYJ01000015.1Sequence record reported by the local genomic context database.
Genomic interval45 446-47 551 nt2 106 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span45 446-47 551 ntGCF_003611795::NZ_RAYJ01000015.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003611795::NZ_RAYJ01000015.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RAYJ01000015.1All displayed genes belong to this local TCS context.
Neighborhood span45 446-47 551 nt2 106 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 446 nt47 551 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
D7V67_RS13625GCF_003611795#D7V67_RS13625
HKClassicCurrent focus
45 446-47 551 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001679805#CP373A1_RS02495Use this link to inspect the representative gene detail.
PFAM architecturePAS_9 + PAS_9 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0767357
Simplified PFAM architecture for HKOC_0767357
PFAM domain coverage: 334 / 701 aa (47.6%)
1 aa701 aa
PAS_9PAS_9HisKAHATPase_c
- Simplified architecture: PAS_9 + PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS_9[29-124] | PAS_9[330-383] | HisKA[440-510] | HATPase_c[557-669]
- Domain count: 4
- Matched identifier: HKOC_0767357
- Positioned domains: PAS_9 29-124 ; PAS_9 330-383 ; HisKA 440-510 ; HATPase_c 557-669
Cluster members and taxonomy
Representative gene: GCF_001679805#CP373A1_RS02495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_003611795
AssemblyASM361179v1 · Contighaploid
Genome composition3 518 269 bp · 29,5% GCClostridium paraputrificum
Signal transduction countsGenes 72 · HK 38 · RR 32CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key