1 HisKA#1
182-249 aa · 68 aa · 16.7% of protein
Raw token
HisKA:182:0.00000000000000485:249:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D7V67_RS02365
Histidine kinase, Classic
Clostridium paraputrificum · GCF_003611795
ClassHKTypeClassicLength407 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003611795#D7V67_RS02365Stable P2CS identifier used across views.
GenomeGCF_003611795Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length407 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 407 aa (43.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa407 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
294-401 aa · 108 aa · 26.5% of protein
Raw token
HATPase_c:294:2.58e-24:401:109:109- Raw architecture: HisKA:182:0.00000000000000485:249:68:64#HATPase_c:294:2.58e-24:401:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003611795::NZ_RAYJ01000001.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span493678-495587Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD7V67_02365RefSeq proteinWP_027099266.1
Context group ID
GCF_003611795::NZ_RAYJ01000001.1::G00016Context members
D7V67_RS02365D7V67_RS02370
Partner locus tags
D7V67_RS02365D7V67_RS02370
Partner old locus tags
D7V67_02365D7V67_02370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027099266.1Primary protein accession used for annex mappings.
UniProt accessionA0A1B8RL12Primary UniProt accession resolved in the annex database.
UniProt IDA0A1B8RL12_9CLOTDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD7V67_RS02365Primary locus identifier stored in the genes table.
Old locus tagD7V67_02365Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RAYJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval493 678-494 901 nt1 224 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span493 678-495 587 ntGCF_003611795::NZ_RAYJ01000001.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003611795::NZ_RAYJ01000001.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RAYJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span493 678-495 587 nt1 910 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
493 678 nt495 587 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
D7V67_RS02365GCF_003611795#D7V67_RS02365
HKClassicCurrent focus
493 678-494 901 nt · Reverse (-)
D7V67_RS02370GCF_003611795#D7V67_RS02370
RROmpR
494 904-495 587 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0114780Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2380225
Simplified PFAM architecture for HKOC_2380225
PFAM domain coverage: 175 / 407 aa (43.0%)
1 aa407 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[183-248] | HATPase_c[294-402]
- Domain count: 2
- Matched identifier: HKOC_2380225
- Positioned domains: HisKA 183-248 ; HATPase_c 294-402
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0114780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_003611795
AssemblyASM361179v1 · Contighaploid
Genome composition3 518 269 bp · 29,5% GCClostridium paraputrificum
Signal transduction countsGenes 72 · HK 38 · RR 32CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key