1 Response_reg#1
4-116 aa · 113 aa · 53.3% of protein
Raw token
Response_reg:4:2.79e-33:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCY92_RS20900
Response regulator NarL family
Bacillus wiedmannii · GCF_003610835
ClassRRTypeNarLLength212 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003610835#BCY92_RS20900Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length212 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 212 aa (79.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa212 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
149-203 aa · 55 aa · 25.9% of protein
Raw token
HTH_LUXR:149:2e-24:203:55:58- Raw architecture: Response_reg:4:2.79e-33:116:113:111#HTH_LUXR:149:2e-24:203:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003610835::NZ_MCAT01000024.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span114163-116635Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCY92_14355RefSeq proteinWP_076540930.1
Context group ID
GCF_003610835::NZ_MCAT01000024.1::G00045Context members
BCY92_RS20895BCY92_RS20900
Partner locus tags
BCY92_RS20895BCY92_RS20900
Partner old locus tags
BCY92_14350BCY92_14355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_076540930.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCY92_RS20900Primary locus identifier stored in the genes table.
Old locus tagBCY92_14355Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MCAT01000024.1Sequence record reported by the local genomic context database.
Genomic interval115 997-116 635 nt639 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span114 163-116 635 ntGCF_003610835::NZ_MCAT01000024.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003610835::NZ_MCAT01000024.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MCAT01000024.1All displayed genes belong to this local TCS context.
Neighborhood span114 163-116 635 nt2 473 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
114 163 nt116 635 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BCY92_RS20895GCF_003610835#BCY92_RS20895
HKClassic
114 163-116 022 nt · Forward (+)
BCY92_RS20900GCF_003610835#BCY92_RS20900
RRNarLCurrent focus
115 997-116 635 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003610835#BCY92_RS20900The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1990470
Simplified PFAM architecture for RROC_1990470
PFAM domain coverage: 169 / 212 aa (79.7%)
1 aa212 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[148-203]
- Domain count: 2
- Matched identifier: RROC_1990470
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 148-203 ; GerE 148-203
Cluster members and taxonomy
Representative gene: GCF_003610835#BCY92_RS20900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_003610835
AssemblyASM361083v1 · Scaffoldhaploid
Genome composition5 302 495 bp · 35,5% GCBacillus wiedmannii
Signal transduction countsGenes 123 · HK 67 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key