1 Response_reg#1
5-109 aa · 105 aa · 43.6% of protein
Raw token
Response_reg:5:1.86e-28:109:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DA436_RS08965
Response regulator OmpR family
Clostridioides difficile · GCF_003597915
ClassRRTypeOmpRLength241 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003597915#DA436_RS08965Stable P2CS identifier used across views.
GenomeGCF_003597915Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 241 aa (75.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-236 aa · 77 aa · 32.0% of protein
Raw token
Trans_reg_C:160:3.22e-32:236:77:77- Raw architecture: Response_reg:5:1.86e-28:109:106:111#Trans_reg_C:160:3.22e-32:236:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003597915::NZ_CP028530.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1854988-1857120Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDA436_08965RefSeq proteinWP_009893221.1
Context group ID
GCF_003597915::NZ_CP028530.1::G00027Context members
DA436_RS08965DA436_RS08970
Partner locus tags
DA436_RS08965DA436_RS08970
Partner old locus tags
DA436_08965DA436_08970
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009893221.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3N751Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3N751_CLODCDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDA436_RS08965Primary locus identifier stored in the genes table.
Old locus tagDA436_08965Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP028530.1Sequence record reported by the local genomic context database.
Genomic interval1 854 988-1 855 713 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 854 988-1 857 120 ntGCF_003597915::NZ_CP028530.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003597915::NZ_CP028530.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP028530.1All displayed genes belong to this local TCS context.
Neighborhood span1 854 988-1 857 120 nt2 133 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 854 988 nt1 857 120 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DA436_RS08965GCF_003597915#DA436_RS08965
RROmpRCurrent focus
1 854 988-1 855 713 nt · Forward (+)
DA436_RS08970GCF_003597915#DA436_RS08970
HKClassic
1 855 717-1 857 120 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0208645Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0862557
Simplified PFAM architecture for RROC_0862557
PFAM domain coverage: 184 / 241 aa (76.3%)
1 aa241 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-111] | Trans_reg_C[160-236]
- Domain count: 2
- Matched identifier: RROC_0862557
- Positioned domains: Response_reg 5-111 ; Response_reg 5-111 ; Trans_reg_C 160-236 ; Trans_reg_C 160-236
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0208645
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 397 total members. Page 1 / 8.
GCF_000003215#QAC_RS0208645 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003597915
AssemblyASM359791v1 · Chromosomehaploid
Genome composition4 174 406 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 105 · HK 50 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key