1 Response_reg#1
3-117 aa · 115 aa · 38.7% of protein
Raw token
Response_reg:3:1.42e-21:117:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KGMB01110_RS13740
Response regulator OmpR family
Mediterraneibacter butyricigenes · GCF_003574295
ClassRRTypeOmpRLength297 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003574295#KGMB01110_RS13740Stable P2CS identifier used across views.
GenomeGCF_003574295Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length297 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 297 aa (57.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa297 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-214 aa · 55 aa · 18.5% of protein
Raw token
Trans_reg_C:160:0.00000199:214:57:77- Raw architecture: Response_reg:3:1.42e-21:117:117:111#Trans_reg_C:160:0.00000199:214:57:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003574295::NZ_BHGK01000001.1::G00031
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2805641-2806534Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKGMB01110_26990RefSeq proteinWP_117602441.1
Context group ID
GCF_003574295::NZ_BHGK01000001.1::G00031Context members
KGMB01110_RS13740
Partner locus tags
KGMB01110_RS13740
Partner old locus tags
KGMB01110_26990
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117602441.1Primary protein accession used for annex mappings.
UniProt accessionA0A391PEZ6Primary UniProt accession resolved in the annex database.
UniProt IDA0A391PEZ6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKGMB01110_RS13740Primary locus identifier stored in the genes table.
Old locus tagKGMB01110_26990Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BHGK01000001.1Sequence record reported by the local genomic context database.
Genomic interval2 805 641-2 806 534 nt894 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 805 641-2 806 534 ntGCF_003574295::NZ_BHGK01000001.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003574295::NZ_BHGK01000001.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BHGK01000001.1All displayed genes belong to this local TCS context.
Neighborhood span2 805 641-2 806 534 nt894 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 805 641 nt2 806 534 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KGMB01110_RS13740GCF_003574295#KGMB01110_RS13740
RROmpRCurrent focus
2 805 641-2 806 534 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003574295#KGMB01110_RS13740The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0579297
Simplified PFAM architecture for RROC_0579297
PFAM domain coverage: 169 / 297 aa (56.9%)
1 aa297 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-116] | Trans_reg_C[157-211]
- Domain count: 2
- Matched identifier: RROC_0579297
- Positioned domains: Response_reg 3-116 ; Response_reg 3-116 ; Trans_reg_C 157-211 ; Trans_reg_C 157-211
Cluster members and taxonomy
Representative gene: GCF_003574295#KGMB01110_RS13740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 316 025 · GCF_003574295
AssemblyASM357429v1 · Contigreference genome · haploid
Genome composition3 034 489 bp · 44,0% GCMediterraneibacter butyricigenes
Signal transduction countsGenes 58 · HK 29 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key