1 HAMP#1
199-265 aa · 67 aa · 13.5% of protein
Raw token
HAMP:199:0.000000021:265:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KGMB01110_RS13185
Histidine kinase, Classic
Mediterraneibacter butyricigenes · GCF_003574295
ClassHKTypeClassicLength496 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003574295#KGMB01110_RS13185Stable P2CS identifier used across views.
GenomeGCF_003574295Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length496 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 496 aa (49.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa496 aa
Domain-by-domain annotation3 items
2 HisKA#2
270-335 aa · 66 aa · 13.3% of protein
Raw token
HisKA:270:0.00000000000409:335:66:643 HATPase_c#3
383-492 aa · 110 aa · 22.2% of protein
Raw token
HATPase_c:383:7.15e-32:492:110:109- Raw architecture: HAMP:199:0.000000021:265:67:69#HisKA:270:0.00000000000409:335:66:64#HATPase_c:383:7.15e-32:492:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003574295::NZ_BHGK01000001.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2682300-2684421Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKGMB01110_25880RefSeq proteinWP_119298802.1
Context group ID
GCF_003574295::NZ_BHGK01000001.1::G00029Context members
KGMB01110_RS13180KGMB01110_RS13185
Partner locus tags
KGMB01110_RS13180KGMB01110_RS13185
Partner old locus tags
KGMB01110_25870KGMB01110_25880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_119298802.1Primary protein accession used for annex mappings.
UniProt accessionA0A391PM43Primary UniProt accession resolved in the annex database.
UniProt IDA0A391PM43_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKGMB01110_RS13185Primary locus identifier stored in the genes table.
Old locus tagKGMB01110_25880Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BHGK01000001.1Sequence record reported by the local genomic context database.
Genomic interval2 682 931-2 684 421 nt1 491 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 682 300-2 684 421 ntGCF_003574295::NZ_BHGK01000001.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003574295::NZ_BHGK01000001.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BHGK01000001.1All displayed genes belong to this local TCS context.
Neighborhood span2 682 300-2 684 421 nt2 122 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 682 300 nt2 684 421 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KGMB01110_RS13180GCF_003574295#KGMB01110_RS13180
RROmpR
2 682 300-2 682 986 nt · Forward (+)
KGMB01110_RS13185GCF_003574295#KGMB01110_RS13185
HKClassicCurrent focus
2 682 931-2 684 421 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003574295#KGMB01110_RS13185The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1500018
Simplified PFAM architecture for HKOC_1500018
PFAM domain coverage: 176 / 496 aa (35.5%)
1 aa496 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[270-335] | HATPase_c[383-492]
- Domain count: 2
- Matched identifier: HKOC_1500018
- Positioned domains: HisKA 270-335 ; HATPase_c 383-492
Cluster members and taxonomy
Representative gene: GCF_003574295#KGMB01110_RS13185
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 316 025 · GCF_003574295
AssemblyASM357429v1 · Contigreference genome · haploid
Genome composition3 034 489 bp · 44,0% GCMediterraneibacter butyricigenes
Signal transduction countsGenes 58 · HK 29 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key