1 HAMP#1
173-242 aa · 70 aa · 14.3% of protein
Raw token
HAMP:173:0.000000000000039:242:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KGMB01110_RS11725
Histidine kinase, Classic
Mediterraneibacter butyricigenes · GCF_003574295
ClassHKTypeClassicLength491 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003574295#KGMB01110_RS11725Stable P2CS identifier used across views.
GenomeGCF_003574295Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length491 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 491 aa (50.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa491 aa
Domain-by-domain annotation3 items
2 HisKA#2
267-334 aa · 68 aa · 13.8% of protein
Raw token
HisKA:267:0.0000000000000187:334:68:643 HATPase_c#3
379-487 aa · 109 aa · 22.2% of protein
Raw token
HATPase_c:379:2.65e-19:487:110:109- Raw architecture: HAMP:173:0.000000000000039:242:70:69#HisKA:267:0.0000000000000187:334:68:64#HATPase_c:379:2.65e-19:487:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003574295::NZ_BHGK01000001.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2380853-2383011Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKGMB01110_22820RefSeq proteinWP_117603475.1
Context group ID
GCF_003574295::NZ_BHGK01000001.1::G00024Context members
KGMB01110_RS11720KGMB01110_RS11725
Partner locus tags
KGMB01110_RS11720KGMB01110_RS11725
Partner old locus tags
KGMB01110_22810KGMB01110_22820
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117603475.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKGMB01110_RS11725Primary locus identifier stored in the genes table.
Old locus tagKGMB01110_22820Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BHGK01000001.1Sequence record reported by the local genomic context database.
Genomic interval2 381 536-2 383 011 nt1 476 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 380 853-2 383 011 ntGCF_003574295::NZ_BHGK01000001.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003574295::NZ_BHGK01000001.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BHGK01000001.1All displayed genes belong to this local TCS context.
Neighborhood span2 380 853-2 383 011 nt2 159 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 380 853 nt2 383 011 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KGMB01110_RS11720GCF_003574295#KGMB01110_RS11720
RROmpR
2 380 853-2 381 536 nt · Forward (+)
KGMB01110_RS11725GCF_003574295#KGMB01110_RS11725
HKClassicCurrent focus
2 381 536-2 383 011 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003574295#KGMB01110_RS11725The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1528582
Simplified PFAM architecture for HKOC_1528582
PFAM domain coverage: 226 / 491 aa (46.0%)
1 aa491 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[191-241] | HisKA[267-332] | HATPase_c[380-488]
- Domain count: 3
- Matched identifier: HKOC_1528582
- Positioned domains: HAMP 191-241 ; HisKA 267-332 ; HATPase_c 380-488
Cluster members and taxonomy
Representative gene: GCF_003574295#KGMB01110_RS11725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 316 025 · GCF_003574295
AssemblyASM357429v1 · Contigreference genome · haploid
Genome composition3 034 489 bp · 44,0% GCMediterraneibacter butyricigenes
Signal transduction countsGenes 58 · HK 29 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key