1 GGDEF#1
142-287 aa · 146 aa · 22.5% of protein
Raw token
GGDEF:142:1.94e-38:287:160:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KGMB01110_RS09615
Response regulator, RpfG family
Mediterraneibacter butyricigenes · GCF_003574295
ClassRRTypeRpfGLength650 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003574295#KGMB01110_RS09615Stable P2CS identifier used across views.
GenomeGCF_003574295Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_regHD
Protein length650 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage381 / 650 aa (58.6%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa650 aa
Domain-by-domain annotation3 items
2 Response_reg#2
308-421 aa · 114 aa · 17.5% of protein
Raw token
Response_reg:308:5.8e-27:421:115:1113 HD#3
481-601 aa · 121 aa · 18.6% of protein
Raw token
HD:481:0.000000000016:601:121:110- Raw architecture: GGDEF:142:1.94e-38:287:160:160#Response_reg:308:5.8e-27:421:115:111#HD:481:0.000000000016:601:121:110
- Domain description: 1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003574295::NZ_BHGK01000001.1::G00016
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1954150-1956102Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKGMB01110_18620RefSeq proteinWP_243112771.1
Context group ID
GCF_003574295::NZ_BHGK01000001.1::G00016Context members
KGMB01110_RS09615
Partner locus tags
KGMB01110_RS09615
Partner old locus tags
KGMB01110_18620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_243112771.1Primary protein accession used for annex mappings.
UniProt accessionA0A391P5C9Primary UniProt accession resolved in the annex database.
UniProt IDA0A391P5C9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKGMB01110_RS09615Primary locus identifier stored in the genes table.
Old locus tagKGMB01110_18620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BHGK01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 954 150-1 956 102 nt1 953 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 954 150-1 956 102 ntGCF_003574295::NZ_BHGK01000001.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003574295::NZ_BHGK01000001.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BHGK01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 954 150-1 956 102 nt1 953 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 954 150 nt1 956 102 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KGMB01110_RS09615GCF_003574295#KGMB01110_RS09615
RRRpfGCurrent focus
1 954 150-1 956 102 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003574295#KGMB01110_RS09615The current gene is the representative for this cluster.
PFAM architectureGGDEF + Response_reg + HD_53 domains in the representative PFAM annotation.
PFAM architecture for RROC_0036115
Simplified PFAM architecture for RROC_0036115
PFAM domain coverage: 400 / 650 aa (61.5%)
1 aa650 aa
GGDEFResponse_regHD_5
- Simplified architecture: GGDEF + Response_reg + HD_5
- Raw architecture: GGDEF[142-286] | Response_reg[308-420] | HD_5[480-621]
- Domain count: 3
- Matched identifier: RROC_0036115
- Positioned domains: GGDEF 142-286 ; GGDEF 142-286 ; Response_reg 308-420 ; Response_reg 308-420 ; HD_5 480-621 ; HD_5 480-621
Cluster members and taxonomy
Representative gene: GCF_003574295#KGMB01110_RS09615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 316 025 · GCF_003574295
AssemblyASM357429v1 · Contigreference genome · haploid
Genome composition3 034 489 bp · 44,0% GCMediterraneibacter butyricigenes
Signal transduction countsGenes 58 · HK 29 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key