1 GGDEF#1
109-249 aa · 141 aa · 22.0% of protein
Raw token
GGDEF:109:2.64e-39:249:154:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KGMB01110_RS09195
Response regulator, RpfG family
Mediterraneibacter butyricigenes · GCF_003574295
ClassRRTypeRpfGLength642 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003574295#KGMB01110_RS09195Stable P2CS identifier used across views.
GenomeGCF_003574295Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_regHD
Protein length642 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage352 / 642 aa (54.8%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa642 aa
Domain-by-domain annotation3 items
2 Response_reg#2
281-387 aa · 107 aa · 16.7% of protein
Raw token
Response_reg:281:2.43e-23:387:109:1113 HD#3
471-574 aa · 104 aa · 16.2% of protein
Raw token
HD:471:0.000000000000128:574:104:110- Raw architecture: GGDEF:109:2.64e-39:249:154:160#Response_reg:281:2.43e-23:387:109:111#HD:471:0.000000000000128:574:104:110
- Domain description: 1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003574295::NZ_BHGK01000001.1::G00014
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1863203-1865131Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKGMB01110_17780RefSeq proteinWP_119298094.1
Context group ID
GCF_003574295::NZ_BHGK01000001.1::G00014Context members
KGMB01110_RS09195
Partner locus tags
KGMB01110_RS09195
Partner old locus tags
KGMB01110_17780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_119298094.1Primary protein accession used for annex mappings.
UniProt accessionA0A391PKI6Primary UniProt accession resolved in the annex database.
UniProt IDA0A391PKI6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKGMB01110_RS09195Primary locus identifier stored in the genes table.
Old locus tagKGMB01110_17780Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BHGK01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 863 203-1 865 131 nt1 929 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 863 203-1 865 131 ntGCF_003574295::NZ_BHGK01000001.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003574295::NZ_BHGK01000001.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BHGK01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 863 203-1 865 131 nt1 929 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 863 203 nt1 865 131 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KGMB01110_RS09195GCF_003574295#KGMB01110_RS09195
RRRpfGCurrent focus
1 863 203-1 865 131 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003574295#KGMB01110_RS09195The current gene is the representative for this cluster.
PFAM architectureGGDEF + Response_reg + HD_53 domains in the representative PFAM annotation.
PFAM architecture for RROC_0037169
Simplified PFAM architecture for RROC_0037169
PFAM domain coverage: 399 / 642 aa (62.1%)
1 aa642 aa
GGDEFResponse_regHD_5
- Simplified architecture: GGDEF + Response_reg + HD_5
- Raw architecture: GGDEF[109-251] | Response_reg[281-390] | HD_5[450-595]
- Domain count: 3
- Matched identifier: RROC_0037169
- Positioned domains: GGDEF 109-251 ; GGDEF 109-251 ; Response_reg 281-390 ; Response_reg 281-390 ; HD_5 450-595 ; HD_5 450-595
Cluster members and taxonomy
Representative gene: GCF_003574295#KGMB01110_RS09195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 316 025 · GCF_003574295
AssemblyASM357429v1 · Contigreference genome · haploid
Genome composition3 034 489 bp · 44,0% GCMediterraneibacter butyricigenes
Signal transduction countsGenes 58 · HK 29 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key