1 His_kinase#1
399-486 aa · 88 aa · 14.8% of protein
Raw token
His_kinase:399:2.43e-25:486:89:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KGMB01110_RS09185
Histidine kinase, Classic
Mediterraneibacter butyricigenes · GCF_003574295
ClassHKTypeClassicLength595 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003574295#KGMB01110_RS09185Stable P2CS identifier used across views.
GenomeGCF_003574295Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length595 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 595 aa (29.7%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa595 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
507-595 aa · 89 aa · 15.0% of protein
Raw token
HATPase_c:507:0.00000000000000102:595:101:109- Raw architecture: His_kinase:399:2.43e-25:486:89:80#HATPase_c:507:0.00000000000000102:595:101:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003574295::NZ_BHGK01000001.1::G00013
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1860723-1862510Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKGMB01110_17760RefSeq proteinWP_119298092.1
Context group ID
GCF_003574295::NZ_BHGK01000001.1::G00013Context members
KGMB01110_RS09185
Partner locus tags
KGMB01110_RS09185
Partner old locus tags
KGMB01110_17760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_119298092.1Primary protein accession used for annex mappings.
UniProt accessionA0A391P2I3Primary UniProt accession resolved in the annex database.
UniProt IDA0A391P2I3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKGMB01110_RS09185Primary locus identifier stored in the genes table.
Old locus tagKGMB01110_17760Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BHGK01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 860 723-1 862 510 nt1 788 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 860 723-1 862 510 ntGCF_003574295::NZ_BHGK01000001.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003574295::NZ_BHGK01000001.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BHGK01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 860 723-1 862 510 nt1 788 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 860 723 nt1 862 510 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KGMB01110_RS09185GCF_003574295#KGMB01110_RS09185
HKClassicCurrent focus
1 860 723-1 862 510 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003574295#KGMB01110_RS09185The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1081902
Simplified PFAM architecture for HKOC_1081902
PFAM domain coverage: 171 / 595 aa (28.7%)
1 aa595 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[408-486] | HATPase_c[503-594]
- Domain count: 2
- Matched identifier: HKOC_1081902
- Positioned domains: His_kinase 408-486 ; HATPase_c 503-594
Cluster members and taxonomy
Representative gene: GCF_003574295#KGMB01110_RS09185
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 316 025 · GCF_003574295
AssemblyASM357429v1 · Contigreference genome · haploid
Genome composition3 034 489 bp · 44,0% GCMediterraneibacter butyricigenes
Signal transduction countsGenes 58 · HK 29 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key