1 Response_reg#1
7-116 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:7:5.09e-37:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KGMB01110_RS08855
Response regulator OmpR family
Mediterraneibacter butyricigenes · GCF_003574295
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003574295#KGMB01110_RS08855Stable P2CS identifier used across views.
GenomeGCF_003574295Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 235 aa (78.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-230 aa · 74 aa · 31.5% of protein
Raw token
Trans_reg_C:157:2.77e-33:230:76:77- Raw architecture: Response_reg:7:5.09e-37:116:111:111#Trans_reg_C:157:2.77e-33:230:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003574295::NZ_BHGK01000001.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1783707-1785888Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKGMB01110_17090RefSeq proteinWP_117603032.1
Context group ID
GCF_003574295::NZ_BHGK01000001.1::G00011Context members
KGMB01110_RS08850KGMB01110_RS08855
Partner locus tags
KGMB01110_RS08850KGMB01110_RS08855
Partner old locus tags
KGMB01110_17080KGMB01110_17090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117603032.1Primary protein accession used for annex mappings.
UniProt accessionA0A391PC78Primary UniProt accession resolved in the annex database.
UniProt IDA0A391PC78_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKGMB01110_RS08855Primary locus identifier stored in the genes table.
Old locus tagKGMB01110_17090Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BHGK01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 785 181-1 785 888 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 783 707-1 785 888 ntGCF_003574295::NZ_BHGK01000001.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003574295::NZ_BHGK01000001.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BHGK01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 783 707-1 785 888 nt2 182 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 783 707 nt1 785 888 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KGMB01110_RS08850GCF_003574295#KGMB01110_RS08850
HKClassic
1 783 707-1 785 119 nt · Reverse (-)
KGMB01110_RS08855GCF_003574295#KGMB01110_RS08855
RROmpRCurrent focus
1 785 181-1 785 888 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003574295#KGMB01110_RS08855The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1024670
Simplified PFAM architecture for RROC_1024670
PFAM domain coverage: 184 / 235 aa (78.3%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-116] | Trans_reg_C[157-230]
- Domain count: 2
- Matched identifier: RROC_1024670
- Positioned domains: Response_reg 7-116 ; Response_reg 7-116 ; Trans_reg_C 157-230 ; Trans_reg_C 157-230
Cluster members and taxonomy
Representative gene: GCF_003574295#KGMB01110_RS08855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 316 025 · GCF_003574295
AssemblyASM357429v1 · Contigreference genome · haploid
Genome composition3 034 489 bp · 44,0% GCMediterraneibacter butyricigenes
Signal transduction countsGenes 58 · HK 29 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key