1 HAMP#1
171-240 aa · 70 aa · 14.9% of protein
Raw token
HAMP:171:0.0000000000857:240:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KGMB01110_RS08850
Histidine kinase, Classic
Mediterraneibacter butyricigenes · GCF_003574295
ClassHKTypeClassicLength470 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003574295#KGMB01110_RS08850Stable P2CS identifier used across views.
GenomeGCF_003574295Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length470 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 470 aa (50.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa470 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-304 aa · 60 aa · 12.8% of protein
Raw token
HisKA:245:0.00000000000000309:304:60:643 HATPase_c#3
356-464 aa · 109 aa · 23.2% of protein
Raw token
HATPase_c:356:1.34e-31:464:109:109- Raw architecture: HAMP:171:0.0000000000857:240:70:69#HisKA:245:0.00000000000000309:304:60:64#HATPase_c:356:1.34e-31:464:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003574295::NZ_BHGK01000001.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1783707-1785888Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKGMB01110_17080RefSeq proteinWP_119299141.1
Context group ID
GCF_003574295::NZ_BHGK01000001.1::G00011Context members
KGMB01110_RS08850KGMB01110_RS08855
Partner locus tags
KGMB01110_RS08850KGMB01110_RS08855
Partner old locus tags
KGMB01110_17080KGMB01110_17090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_119299141.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKGMB01110_RS08850Primary locus identifier stored in the genes table.
Old locus tagKGMB01110_17080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BHGK01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 783 707-1 785 119 nt1 413 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 783 707-1 785 888 ntGCF_003574295::NZ_BHGK01000001.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003574295::NZ_BHGK01000001.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BHGK01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 783 707-1 785 888 nt2 182 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 783 707 nt1 785 888 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KGMB01110_RS08850GCF_003574295#KGMB01110_RS08850
HKClassicCurrent focus
1 783 707-1 785 119 nt · Reverse (-)
KGMB01110_RS08855GCF_003574295#KGMB01110_RS08855
RROmpR
1 785 181-1 785 888 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003574295#KGMB01110_RS08850The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1719428
Simplified PFAM architecture for HKOC_1719428
PFAM domain coverage: 219 / 470 aa (46.6%)
1 aa470 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[195-240] | HisKA[245-308] | HATPase_c[357-465]
- Domain count: 3
- Matched identifier: HKOC_1719428
- Positioned domains: HAMP 195-240 ; HisKA 245-308 ; HATPase_c 357-465
Cluster members and taxonomy
Representative gene: GCF_003574295#KGMB01110_RS08850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 316 025 · GCF_003574295
AssemblyASM357429v1 · Contigreference genome · haploid
Genome composition3 034 489 bp · 44,0% GCMediterraneibacter butyricigenes
Signal transduction countsGenes 58 · HK 29 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key