1 PAS_3#1
190-278 aa · 89 aa · 13.0% of protein
Raw token
PAS_3:190:0.00000126:278:94:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KGMB01110_RS08505
Histidine kinase, Hybrid
Mediterraneibacter butyricigenes · GCF_003574295
ClassHKTypeHybridLength684 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003574295#KGMB01110_RS08505Stable P2CS identifier used across views.
GenomeGCF_003574295Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length684 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage391 / 684 aa (57.2%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa684 aa
Domain-by-domain annotation4 items
2 HisKA#2
308-374 aa · 67 aa · 9.8% of protein
Raw token
HisKA:308:6.89e-16:374:68:643 HATPase_c#3
423-540 aa · 118 aa · 17.3% of protein
Raw token
HATPase_c:423:1.9e-26:540:118:1094 Response_reg#4
564-680 aa · 117 aa · 17.1% of protein
Raw token
Response_reg:564:1.63e-24:680:117:111- Raw architecture: PAS_3:190:0.00000126:278:94:89#HisKA:308:6.89e-16:374:68:64#HATPase_c:423:1.9e-26:540:118:109#Response_reg:564:1.63e-24:680:117:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003574295::NZ_BHGK01000001.1::G00010
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1705768-1707822Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKGMB01110_16430RefSeq proteinWP_119298016.1
Context group ID
GCF_003574295::NZ_BHGK01000001.1::G00010Context members
KGMB01110_RS08505
Partner locus tags
KGMB01110_RS08505
Partner old locus tags
KGMB01110_16430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_119298016.1Primary protein accession used for annex mappings.
UniProt accessionA0A391P1N7Primary UniProt accession resolved in the annex database.
UniProt IDA0A391P1N7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKGMB01110_RS08505Primary locus identifier stored in the genes table.
Old locus tagKGMB01110_16430Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BHGK01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 705 768-1 707 822 nt2 055 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 705 768-1 707 822 ntGCF_003574295::NZ_BHGK01000001.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003574295::NZ_BHGK01000001.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BHGK01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 705 768-1 707 822 nt2 055 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 705 768 nt1 707 822 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KGMB01110_RS08505GCF_003574295#KGMB01110_RS08505
HKHybridCurrent focus
1 705 768-1 707 822 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003574295#KGMB01110_RS08505The current gene is the representative for this cluster.
PFAM architecturePAS_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0806263
Simplified PFAM architecture for HKOC_0806263
PFAM domain coverage: 377 / 684 aa (55.1%)
1 aa684 aa
PAS_3HisKAHATPase_cResponse_reg
- Simplified architecture: PAS_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: PAS_3[191-270] | HisKA[308-374] | HATPase_c[425-538] | Response_reg[564-679]
- Domain count: 4
- Matched identifier: HKOC_0806263
- Positioned domains: PAS_3 191-270 ; HisKA 308-374 ; HATPase_c 425-538 ; Response_reg 564-679
Cluster members and taxonomy
Representative gene: GCF_003574295#KGMB01110_RS08505
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 316 025 · GCF_003574295
AssemblyASM357429v1 · Contigreference genome · haploid
Genome composition3 034 489 bp · 44,0% GCMediterraneibacter butyricigenes
Signal transduction countsGenes 58 · HK 29 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key