1 Response_reg#1
6-114 aa · 109 aa · 20.4% of protein
Raw token
Response_reg:6:2.32e-27:114:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KGMB01110_RS06565
Response regulator, unclassified
Mediterraneibacter butyricigenes · GCF_003574295
ClassRRTypeunclassifiedLength534 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003574295#KGMB01110_RS06565Stable P2CS identifier used across views.
GenomeGCF_003574295Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length534 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage176 / 534 aa (33.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa534 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
442-479 aa · 38 aa · 7.1% of protein
Raw token
HTH_AraC:442:0.0000000276:479:38:423 HTH_AraC#3
500-528 aa · 29 aa · 5.4% of protein
Raw token
HTH_AraC:500:0.000000283:528:29:42- Raw architecture: Response_reg:6:2.32e-27:114:109:111#HTH_AraC:442:0.0000000276:479:38:42#HTH_AraC:500:0.000000283:528:29:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003574295::NZ_BHGK01000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1338864-1342331Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKGMB01110_12660RefSeq proteinWP_117603252.1
Context group ID
GCF_003574295::NZ_BHGK01000001.1::G00006Context members
KGMB01110_RS06560KGMB01110_RS06565
Partner locus tags
KGMB01110_RS06560KGMB01110_RS06565
Partner old locus tags
KGMB01110_12650KGMB01110_12660
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117603252.1Primary protein accession used for annex mappings.
UniProt accessionA0A391P1C2Primary UniProt accession resolved in the annex database.
UniProt IDA0A391P1C2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKGMB01110_RS06565Primary locus identifier stored in the genes table.
Old locus tagKGMB01110_12660Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BHGK01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 340 727-1 342 331 nt1 605 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 338 864-1 342 331 ntGCF_003574295::NZ_BHGK01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003574295::NZ_BHGK01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BHGK01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 338 864-1 342 331 nt3 468 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 338 864 nt1 342 331 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KGMB01110_RS06560GCF_003574295#KGMB01110_RS06560
HKClassic
1 338 864-1 340 669 nt · Reverse (-)
KGMB01110_RS06565GCF_003574295#KGMB01110_RS06565
RRunclassifiedCurrent focus
1 340 727-1 342 331 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003574295#KGMB01110_RS06565The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0103658
Simplified PFAM architecture for RROC_0103658
PFAM domain coverage: 320 / 534 aa (59.9%)
1 aa534 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[6-115] | GGDEF_2[160-291] | HTH_18[452-529]
- Domain count: 3
- Matched identifier: RROC_0103658
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; GGDEF_2 160-291 ; GGDEF_2 160-291 ; HTH_18 452-529 ; HTH_18 452-529
Cluster members and taxonomy
Representative gene: GCF_003574295#KGMB01110_RS06565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 316 025 · GCF_003574295
AssemblyASM357429v1 · Contigreference genome · haploid
Genome composition3 034 489 bp · 44,0% GCMediterraneibacter butyricigenes
Signal transduction countsGenes 58 · HK 29 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key