1 SBP_bac_3#1
77-278 aa · 202 aa · 20.9% of protein
Raw token
SBP_bac_3:77:1.47e-31:278:212:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB02_RS10200
Histidine kinase, Hybrid
Blautia sp. OF11-22 · GCF_003482385
ClassHKTypeHybridLength967 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003482385#DXB02_RS10200Stable P2CS identifier used across views.
GenomeGCF_003482385Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length967 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage709 / 967 aa (73.3%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa967 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
307-510 aa · 204 aa · 21.1% of protein
Raw token
SBP_bac_3:307:0.0000000000634:510:221:2243 HisKA#3
591-656 aa · 66 aa · 6.8% of protein
Raw token
HisKA:591:1.39e-19:656:66:644 HATPase_c#4
703-821 aa · 119 aa · 12.3% of protein
Raw token
HATPase_c:703:1.9e-27:821:120:1095 Response_reg#5
844-961 aa · 118 aa · 12.2% of protein
Raw token
Response_reg:844:9.05e-30:961:118:111- Raw architecture: SBP_bac_3:77:1.47e-31:278:212:224#SBP_bac_3:307:0.0000000000634:510:221:224#HisKA:591:1.39e-19:656:66:64#HATPase_c:703:1.9e-27:821:120:109#Response_reg:844:9.05e-30:961:118:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003482385::NZ_QUMA01000012.1::G00013
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span68210-71113Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB02_10200RefSeq proteinWP_119188800.1
Context group ID
GCF_003482385::NZ_QUMA01000012.1::G00013Context members
DXB02_RS10200
Partner locus tags
DXB02_RS10200
Partner old locus tags
DXB02_10200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_119188800.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB02_RS10200Primary locus identifier stored in the genes table.
Old locus tagDXB02_10200Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMA01000012.1Sequence record reported by the local genomic context database.
Genomic interval68 210-71 113 nt2 904 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span68 210-71 113 ntGCF_003482385::NZ_QUMA01000012.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003482385::NZ_QUMA01000012.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMA01000012.1All displayed genes belong to this local TCS context.
Neighborhood span68 210-71 113 nt2 904 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
68 210 nt71 113 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB02_RS10200GCF_003482385#DXB02_RS10200
HKHybridCurrent focus
68 210-71 113 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003482385#DXB02_RS10200The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0313745
Simplified PFAM architecture for HKOC_0313745
PFAM domain coverage: 698 / 967 aa (72.2%)
1 aa967 aa
SBP_bac_3SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[74-266] | SBP_bac_3[307-510] | HisKA[591-656] | HATPase_c[704-820] | Response_reg[844-961]
- Domain count: 5
- Matched identifier: HKOC_0313745
- Positioned domains: SBP_bac_3 74-266 ; SBP_bac_3 307-510 ; HisKA 591-656 ; HATPase_c 704-820 ; Response_reg 844-961
Cluster members and taxonomy
Representative gene: GCF_003482385#DXB02_RS10200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 982 · GCF_003482385
AssemblyASM348238v1 · Scaffoldhaploid
Genome composition3 767 213 bp · 47,0% GCBlautia sp. OF11-22
Signal transduction countsGenes 103 · HK 52 · RR 48CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key