1 Response_reg#1
5-114 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:5:1.76e-19:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF28670_RS11275
Response regulator OmpR family
Clostridioides difficile · GCF_003482225
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003482225#CDIF28670_RS11275Stable P2CS identifier used across views.
GenomeGCF_003482225Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 226 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-223 aa · 77 aa · 34.1% of protein
Raw token
Trans_reg_C:147:3.74e-21:223:78:77- Raw architecture: Response_reg:5:1.76e-19:114:111:111#Trans_reg_C:147:3.74e-21:223:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003482225::NZ_CP012312.1::G00035
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2273977-2274657Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF28670_02243RefSeq proteinWP_118712560.1
Context group ID
GCF_003482225::NZ_CP012312.1::G00035Context members
CDIF28670_RS11275
Partner locus tags
CDIF28670_RS11275
Partner old locus tags
CDIF28670_02243
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118712560.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF28670_RS11275Primary locus identifier stored in the genes table.
Old locus tagCDIF28670_02243Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP012312.1Sequence record reported by the local genomic context database.
Genomic interval2 273 977-2 274 657 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 273 977-2 274 657 ntGCF_003482225::NZ_CP012312.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003482225::NZ_CP012312.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP012312.1All displayed genes belong to this local TCS context.
Neighborhood span2 273 977-2 274 657 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 273 977 nt2 274 657 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CDIF28670_RS11275GCF_003482225#CDIF28670_RS11275
RROmpRCurrent focus
2 273 977-2 274 657 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003482225#CDIF28670_RS11275The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1421454
Simplified PFAM architecture for RROC_1421454
PFAM domain coverage: 185 / 226 aa (81.9%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1421454
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 148-223 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_003482225#CDIF28670_RS11275
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003482225
AssemblyASM348222v1 · Complete Genomehaploid
Genome composition4 191 653 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 48 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key