1 Response_reg#1
12-102 aa · 91 aa · 42.3% of protein
Raw token
Response_reg:12:1.04e-34:102:91:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA93_RS05320
Response regulator OmpR family
Blautia sp. OF09-25XD · GCF_003482095
ClassRRTypeOmpRLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003482095#DXA93_RS05320Stable P2CS identifier used across views.
GenomeGCF_003482095Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 215 aa (77.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
134-209 aa · 76 aa · 35.3% of protein
Raw token
Trans_reg_C:134:4.43e-22:209:78:77- Raw architecture: Response_reg:12:1.04e-34:102:91:111#Trans_reg_C:134:4.43e-22:209:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003482095::NZ_QUMG01000004.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span173538-175354Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA93_05315RefSeq proteinWP_243105462.1
Context group ID
GCF_003482095::NZ_QUMG01000004.1::G00049Context members
DXA93_RS05320DXA93_RS05325
Partner locus tags
DXA93_RS05320DXA93_RS05325
Partner old locus tags
DXA93_05315DXA93_05320
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243105462.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA93_RS05320Primary locus identifier stored in the genes table.
Old locus tagDXA93_05315Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMG01000004.1Sequence record reported by the local genomic context database.
Genomic interval173 538-174 185 nt648 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span173 538-175 354 ntGCF_003482095::NZ_QUMG01000004.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003482095::NZ_QUMG01000004.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMG01000004.1All displayed genes belong to this local TCS context.
Neighborhood span173 538-175 354 nt1 817 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
173 538 nt175 354 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA93_RS05320GCF_003482095#DXA93_RS05320
RROmpRCurrent focus
173 538-174 185 nt · Forward (+)
DXA93_RS05325GCF_003482095#DXA93_RS05325
HKClassic
174 182-175 354 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480555#DW769_RS14620Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1913344
Simplified PFAM architecture for RROC_1913344
PFAM domain coverage: 172 / 215 aa (80.0%)
1 aa215 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-102] | Trans_reg_C[136-208]
- Domain count: 2
- Matched identifier: RROC_1913344
- Positioned domains: Response_reg 4-102 ; Response_reg 4-102 ; Trans_reg_C 136-208 ; Trans_reg_C 136-208
Cluster members and taxonomy
Representative gene: GCF_003480555#DW769_RS14620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 981 · GCF_003482095
AssemblyASM348209v1 · Contighaploid
Genome composition3 679 129 bp · 47,0% GCBlautia sp. OF09-25XD
Signal transduction countsGenes 81 · HK 41 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key