1 Response_reg#1
6-120 aa · 115 aa · 43.7% of protein
Raw token
Response_reg:6:2.01e-31:120:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB78_RS00590
Response regulator Spo0A family
Clostridium sp. OM05-9BH · GCF_003481445
ClassRRTypeSpo0ALength263 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003481445#DXB78_RS00590Stable P2CS identifier used across views.
GenomeGCF_003481445Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length263 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage219 / 263 aa (83.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa263 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
152-255 aa · 104 aa · 39.5% of protein
Raw token
Spo0A_C:152:1.98e-65:255:104:104- Raw architecture: Response_reg:6:2.01e-31:120:115:111#Spo0A_C:152:1.98e-65:255:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003481445::NZ_QULE01000001.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span121865-122656Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB78_00590RefSeq proteinWP_118689793.1
Context group ID
GCF_003481445::NZ_QULE01000001.1::G00005Context members
DXB78_RS00590
Partner locus tags
DXB78_RS00590
Partner old locus tags
DXB78_00590
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118689793.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB78_RS00590Primary locus identifier stored in the genes table.
Old locus tagDXB78_00590Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QULE01000001.1Sequence record reported by the local genomic context database.
Genomic interval121 865-122 656 nt792 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span121 865-122 656 ntGCF_003481445::NZ_QULE01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481445::NZ_QULE01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span121 865-122 656 nt792 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
121 865 nt122 656 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB78_RS00590GCF_003481445#DXB78_RS00590
RRSpo0ACurrent focus
121 865-122 656 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481445#DXB78_RS00590The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0640634
Simplified PFAM architecture for RROC_0640634
PFAM domain coverage: 219 / 263 aa (83.3%)
1 aa263 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[6-120] | Spo0A_C[152-255]
- Domain count: 2
- Matched identifier: RROC_0640634
- Positioned domains: Response_reg 6-120 ; Response_reg 6-120 ; Spo0A_C 152-255 ; Spo0A_C 152-255
Cluster members and taxonomy
Representative gene: GCF_003481445#DXB78_RS00590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 046 · GCF_003481445
AssemblyASM348144v1 · Scaffoldhaploid
Genome composition3 138 070 bp · 42,0% GCClostridium sp. OM05-9BH
Signal transduction countsGenes 80 · HK 34 · RR 44CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key