1 HisKA#1
430-497 aa · 68 aa · 10.4% of protein
Raw token
HisKA:430:0.0000000000231:497:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB78_RS00010
Histidine kinase, Classic
Clostridium sp. OM05-9BH · GCF_003481445
ClassHKTypeClassicLength657 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481445#DXB78_RS00010Stable P2CS identifier used across views.
GenomeGCF_003481445Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length657 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 657 aa (27.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa657 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
540-652 aa · 113 aa · 17.2% of protein
Raw token
HATPase_c:540:1.11e-28:652:113:109- Raw architecture: HisKA:430:0.0000000000231:497:68:64#HATPase_c:540:1.11e-28:652:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481445::NZ_QULE01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span678-3369Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB78_00010RefSeq proteinWP_118689742.1
Context group ID
GCF_003481445::NZ_QULE01000001.1::G00001Context members
DXB78_RS00005DXB78_RS00010
Partner locus tags
DXB78_RS00005DXB78_RS00010
Partner old locus tags
DXB78_00005DXB78_00010
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118689742.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB78_RS00010Primary locus identifier stored in the genes table.
Old locus tagDXB78_00010Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QULE01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 396-3 369 nt1 974 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span678-3 369 ntGCF_003481445::NZ_QULE01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481445::NZ_QULE01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span678-3 369 nt2 692 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
678 nt3 369 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB78_RS00005GCF_003481445#DXB78_RS00005
RROmpR
678-1 403 nt · Reverse (-)
DXB78_RS00010GCF_003481445#DXB78_RS00010
HKClassicCurrent focus
1 396-3 369 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481445#DXB78_RS00010The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0879214
Simplified PFAM architecture for HKOC_0879214
PFAM domain coverage: 287 / 657 aa (43.7%)
1 aa657 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[161-268] | HisKA[430-497] | HATPase_c[541-651]
- Domain count: 3
- Matched identifier: HKOC_0879214
- Positioned domains: DUF4118 161-268 ; HisKA 430-497 ; HATPase_c 541-651
Cluster members and taxonomy
Representative gene: GCF_003481445#DXB78_RS00010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 046 · GCF_003481445
AssemblyASM348144v1 · Scaffoldhaploid
Genome composition3 138 070 bp · 42,0% GCClostridium sp. OM05-9BH
Signal transduction countsGenes 80 · HK 34 · RR 44CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key