1 HAMP#1
152-222 aa · 71 aa · 15.5% of protein
Raw token
HAMP:152:0.0000396:222:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB83_RS07505
Histidine kinase, Classic
Blautia sp. OM06-15AC · GCF_003481425
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481425#DXB83_RS07505Stable P2CS identifier used across views.
GenomeGCF_003481425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 458 aa (52.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
233-294 aa · 62 aa · 13.5% of protein
Raw token
HisKA:233:0.0000000000211:294:62:643 HATPase_c#3
346-451 aa · 106 aa · 23.1% of protein
Raw token
HATPase_c:346:3.31e-17:451:106:109- Raw architecture: HAMP:152:0.0000396:222:71:69#HisKA:233:0.0000000000211:294:62:64#HATPase_c:346:3.31e-17:451:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481425::NZ_QULD01000004.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span102954-104980Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB83_07520RefSeq proteinWP_118697397.1
Context group ID
GCF_003481425::NZ_QULD01000004.1::G00033Context members
DXB83_RS07505DXB83_RS07510
Partner locus tags
DXB83_RS07505DXB83_RS07510
Partner old locus tags
DXB83_07520DXB83_07525
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118697397.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB83_RS07505Primary locus identifier stored in the genes table.
Old locus tagDXB83_07520Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QULD01000004.1Sequence record reported by the local genomic context database.
Genomic interval102 954-104 330 nt1 377 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span102 954-104 980 ntGCF_003481425::NZ_QULD01000004.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481425::NZ_QULD01000004.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULD01000004.1All displayed genes belong to this local TCS context.
Neighborhood span102 954-104 980 nt2 027 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
102 954 nt104 980 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB83_RS07505GCF_003481425#DXB83_RS07505
HKClassicCurrent focus
102 954-104 330 nt · Reverse (-)
DXB83_RS07510GCF_003481425#DXB83_RS07510
RROmpR
104 318-104 980 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481425#DXB83_RS07505The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1862562
Simplified PFAM architecture for HKOC_1862562
PFAM domain coverage: 166 / 458 aa (36.2%)
1 aa458 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[234-294] | HATPase_c[347-451]
- Domain count: 2
- Matched identifier: HKOC_1862562
- Positioned domains: HisKA 234-294 ; HATPase_c 347-451
Cluster members and taxonomy
Representative gene: GCF_003481425#DXB83_RS07505
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 984 · GCF_003481425
AssemblyASM348142v1 · Scaffoldhaploid
Genome composition3 492 076 bp · 47,0% GCBlautia sp. OM06-15AC
Signal transduction countsGenes 92 · HK 49 · RR 41CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key