1 HAMP#1
183-251 aa · 69 aa · 14.3% of protein
Raw token
HAMP:183:0.000000000237:251:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD21_RS04570
Histidine kinase, Classic
Blautia sp. TF12-12AT · GCF_003481205
ClassHKTypeClassicLength481 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003481205#DXD21_RS04570Stable P2CS identifier used across views.
GenomeGCF_003481205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length481 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 481 aa (50.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa481 aa
Domain-by-domain annotation3 items
2 HisKA#2
255-320 aa · 66 aa · 13.7% of protein
Raw token
HisKA:255:0.000000000007:320:66:643 HATPase_c#3
368-477 aa · 110 aa · 22.9% of protein
Raw token
HATPase_c:368:5.66e-29:477:110:109- Raw architecture: HAMP:183:0.000000000237:251:69:69#HisKA:255:0.000000000007:320:66:64#HATPase_c:368:5.66e-29:477:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003481205::NZ_QUKG01000004.1::G00036
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span127180-128658Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD21_04575RefSeq proteinWP_022462210.1
Context group ID
GCF_003481205::NZ_QUKG01000004.1::G00036Context members
DXD21_RS04570
Partner locus tags
DXD21_RS04570
Partner old locus tags
DXD21_04575
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022462210.1Primary protein accession used for annex mappings.
UniProt accessionA0AAE3F2L1Primary UniProt accession resolved in the annex database.
UniProt IDA0AAE3F2L1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD21_RS04570Primary locus identifier stored in the genes table.
Old locus tagDXD21_04575Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUKG01000004.1Sequence record reported by the local genomic context database.
Genomic interval127 180-128 658 nt1 479 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span127 180-128 658 ntGCF_003481205::NZ_QUKG01000004.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481205::NZ_QUKG01000004.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUKG01000004.1All displayed genes belong to this local TCS context.
Neighborhood span127 180-128 658 nt1 479 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
127 180 nt128 658 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXD21_RS04570GCF_003481205#DXD21_RS04570
HKClassicCurrent focus
127 180-128 658 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479155#DWX26_RS02770Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1613151
Simplified PFAM architecture for HKOC_1613151
PFAM domain coverage: 176 / 481 aa (36.6%)
1 aa481 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[255-320] | HATPase_c[368-477]
- Domain count: 2
- Matched identifier: HKOC_1613151
- Positioned domains: HisKA 255-320 ; HATPase_c 368-477
Cluster members and taxonomy
Representative gene: GCF_003479155#DWX26_RS02770
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 988 · GCF_003481205
AssemblyASM348120v1 · Contighaploid
Genome composition3 327 287 bp · 47,5% GCBlautia sp. TF12-12AT
Signal transduction countsGenes 78 · HK 38 · RR 37CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key