1 HAMP#1
183-251 aa · 69 aa · 14.3% of protein
Raw token
HAMP:183:0.000000000237:251:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX26_RS02770
Histidine kinase, Classic
Blautia sp. AF19-1 · GCF_003479155
ClassHKTypeClassicLength481 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003479155#DWX26_RS02770Stable P2CS identifier used across views.
GenomeGCF_003479155Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length481 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 481 aa (50.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa481 aa
Domain-by-domain annotation3 items
2 HisKA#2
255-320 aa · 66 aa · 13.7% of protein
Raw token
HisKA:255:0.000000000007:320:66:643 HATPase_c#3
368-477 aa · 110 aa · 22.9% of protein
Raw token
HATPase_c:368:5.66e-29:477:110:109- Raw architecture: HAMP:183:0.000000000237:251:69:69#HisKA:255:0.000000000007:320:66:64#HATPase_c:368:5.66e-29:477:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003479155::NZ_QUGQ01000003.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span132312-134424Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX26_02770RefSeq proteinWP_022462210.1
Context group ID
GCF_003479155::NZ_QUGQ01000003.1::G00034Context members
DWX26_RS02770DWX26_RS02775
Partner locus tags
DWX26_RS02770DWX26_RS02775
Partner old locus tags
DWX26_02770DWX26_02775
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022462210.1Primary protein accession used for annex mappings.
UniProt accessionA0AAE3F2L1Primary UniProt accession resolved in the annex database.
UniProt IDA0AAE3F2L1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX26_RS02770Primary locus identifier stored in the genes table.
Old locus tagDWX26_02770Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGQ01000003.1Sequence record reported by the local genomic context database.
Genomic interval132 312-133 790 nt1 479 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span132 312-134 424 ntGCF_003479155::NZ_QUGQ01000003.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003479155::NZ_QUGQ01000003.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGQ01000003.1All displayed genes belong to this local TCS context.
Neighborhood span132 312-134 424 nt2 113 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
132 312 nt134 424 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX26_RS02770GCF_003479155#DWX26_RS02770
HKClassicCurrent focus
132 312-133 790 nt · Reverse (-)
DWX26_RS02775GCF_003479155#DWX26_RS02775
RROmpR
133 735-134 424 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479155#DWX26_RS02770The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1613151
Simplified PFAM architecture for HKOC_1613151
PFAM domain coverage: 176 / 481 aa (36.6%)
1 aa481 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[255-320] | HATPase_c[368-477]
- Domain count: 2
- Matched identifier: HKOC_1613151
- Positioned domains: HisKA 255-320 ; HATPase_c 368-477
Cluster members and taxonomy
Representative gene: GCF_003479155#DWX26_RS02770
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 960 · GCF_003479155
AssemblyASM347915v1 · Scaffoldhaploid
Genome composition3 558 929 bp · 47,5% GCBlautia sp. AF19-1
Signal transduction countsGenes 98 · HK 49 · RR 46CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key