1 Response_reg#1
3-84 aa · 82 aa · 82.0% of protein
Raw token
Response_reg:3:1.24e-22:84:82:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD26_RS16240
Response regulator, CheY family
Blautia sp. TF12-31AT · GCF_003481175
ClassRRTypeCheYLength100 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003481175#DXD26_RS16240Stable P2CS identifier used across views.
GenomeGCF_003481175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length100 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage82 / 100 aa (82.0%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa100 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:1.24e-22:84:82:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003481175::NZ_QUKF01000002.1::G00013
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span7350-12345Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_003481175::NZ_QUKF01000002.1::G00013Context members
DXD26_RS16235DXD26_RS16240DXD26_RS02470
Partner locus tags
DXD26_RS16235DXD26_RS16240DXD26_RS02470
Partner old locus tags
DXD26_02470
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243106357.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD26_RS16240Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_QUKF01000002.1Sequence record reported by the local genomic context database.
Genomic interval9 080-9 382 nt303 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 350-12 345 ntGCF_003481175::NZ_QUKF01000002.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481175::NZ_QUKF01000002.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUKF01000002.1All displayed genes belong to this local TCS context.
Neighborhood span7 350-12 345 nt4 996 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 350 nt12 345 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DXD26_RS16235GCF_003481175#DXD26_RS16235
HKClassic
7 350-9 083 nt · Forward (+)
DXD26_RS16240GCF_003481175#DXD26_RS16240
RRCheYCurrent focus
9 080-9 382 nt · Forward (+)
DXD26_RS02470GCF_003481175#DXD26_RS02470
HKHybrid
9 517-12 345 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481175#DXD26_RS16240The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2471743
Simplified PFAM architecture for RROC_2471743
PFAM domain coverage: 81 / 100 aa (81.0%)
1 aa100 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[3-83]
- Domain count: 1
- Matched identifier: RROC_2471743
- Positioned domains: Response_reg 3-83 ; Response_reg 3-83
Cluster members and taxonomy
Representative gene: GCF_003481175#DXD26_RS16240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 989 · GCF_003481175
AssemblyASM348117v1 · Contighaploid
Genome composition3 324 749 bp · 47,5% GCBlautia sp. TF12-31AT
Signal transduction countsGenes 76 · HK 37 · RR 35CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key