1 HAMP#1
285-351 aa · 67 aa · 11.8% of protein
Raw token
HAMP:285:0.0000000652:351:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD26_RS11350
Histidine kinase, Classic
Blautia sp. TF12-31AT · GCF_003481175
ClassHKTypeClassicLength569 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481175#DXD26_RS11350Stable P2CS identifier used across views.
GenomeGCF_003481175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length569 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage253 / 569 aa (44.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa569 aa
Domain-by-domain annotation3 items
2 His_kinase#2
366-445 aa · 80 aa · 14.1% of protein
Raw token
His_kinase:366:1.92e-28:445:80:803 HATPase_c#3
456-561 aa · 106 aa · 18.6% of protein
Raw token
HATPase_c:456:5.31e-16:561:115:109- Raw architecture: HAMP:285:0.0000000652:351:67:69#His_kinase:366:1.92e-28:445:80:80#HATPase_c:456:5.31e-16:561:115:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481175::NZ_QUKF01000019.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span34818-38049Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD26_11365RefSeq proteinWP_118666434.1
Context group ID
GCF_003481175::NZ_QUKF01000019.1::G00012Context members
DXD26_RS11345DXD26_RS11350
Partner locus tags
DXD26_RS11345DXD26_RS11350
Partner old locus tags
DXD26_11360DXD26_11365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118666434.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD26_RS11350Primary locus identifier stored in the genes table.
Old locus tagDXD26_11365Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUKF01000019.1Sequence record reported by the local genomic context database.
Genomic interval36 340-38 049 nt1 710 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span34 818-38 049 ntGCF_003481175::NZ_QUKF01000019.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481175::NZ_QUKF01000019.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUKF01000019.1All displayed genes belong to this local TCS context.
Neighborhood span34 818-38 049 nt3 232 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 818 nt38 049 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD26_RS11345GCF_003481175#DXD26_RS11345
RRunclassified
34 818-36 377 nt · Forward (+)
DXD26_RS11350GCF_003481175#DXD26_RS11350
HKClassicCurrent focus
36 340-38 049 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481175#DXD26_RS11350The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1217555
Simplified PFAM architecture for HKOC_1217555
PFAM domain coverage: 179 / 569 aa (31.5%)
1 aa569 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[367-443] | HATPase_c[462-563]
- Domain count: 2
- Matched identifier: HKOC_1217555
- Positioned domains: His_kinase 367-443 ; HATPase_c 462-563
Cluster members and taxonomy
Representative gene: GCF_003481175#DXD26_RS11350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 989 · GCF_003481175
AssemblyASM348117v1 · Contighaploid
Genome composition3 324 749 bp · 47,5% GCBlautia sp. TF12-31AT
Signal transduction countsGenes 76 · HK 37 · RR 35CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key