1 Response_reg#1
3-117 aa · 115 aa · 57.8% of protein
Raw token
Response_reg:3:2.39e-19:117:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW716_RS25620
Response regulator NarL family
Absiella sp. AM27-20 · GCF_003480975
ClassRRTypeNarLLength199 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003480975#DW716_RS25620Stable P2CS identifier used across views.
GenomeGCF_003480975Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length199 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 199 aa (86.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa199 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
132-189 aa · 58 aa · 29.1% of protein
Raw token
HTH_LUXR:132:1.12e-18:189:58:58- Raw architecture: Response_reg:3:2.39e-19:117:115:111#HTH_LUXR:132:1.12e-18:189:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003480975::NZ_QUJU01000014.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span35503-36102Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW716_10980RefSeq proteinWP_118667314.1
Context group ID
GCF_003480975::NZ_QUJU01000014.1::G00009Context members
DW716_RS25620
Partner locus tags
DW716_RS25620
Partner old locus tags
DW716_10980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118667314.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW716_RS25620Primary locus identifier stored in the genes table.
Old locus tagDW716_10980Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUJU01000014.1Sequence record reported by the local genomic context database.
Genomic interval35 503-36 102 nt600 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span35 503-36 102 ntGCF_003480975::NZ_QUJU01000014.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480975::NZ_QUJU01000014.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUJU01000014.1All displayed genes belong to this local TCS context.
Neighborhood span35 503-36 102 nt600 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 503 nt36 102 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW716_RS25620GCF_003480975#DW716_RS25620
RRNarLCurrent focus
35 503-36 102 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480975#DW716_RS25620The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2145074
Simplified PFAM architecture for RROC_2145074
PFAM domain coverage: 171 / 199 aa (85.9%)
1 aa199 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-117] | GerE[133-188]
- Domain count: 2
- Matched identifier: RROC_2145074
- Positioned domains: Response_reg 3-117 ; Response_reg 3-117 ; GerE 133-188 ; GerE 133-188
Cluster members and taxonomy
Representative gene: GCF_003480975#DW716_RS25620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 277 · GCF_003480975
AssemblyASM348097v1 · Scaffoldhaploid
Genome composition4 739 334 bp · 35,5% GCAbsiella sp. AM27-20
Signal transduction countsGenes 99 · HK 43 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key